Factsheet for Os10t0566700-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0675000-01
Os01t0760300-01
Os05t0560100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60210.1	Os01t0675000-01	AT1G52240.1	21798944
AT3G60210.1	Os01t0760300-01	AT1G52240.1	21798944
AT3G60210.1	Os05t0560100-01	AT1G52240.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G217600.1	Wheat	plastid	84.29	84.29
TraesCS1A01G214600.1	Wheat	plastid	82.14	83.33
HORVU1Hr1G054630.2	Barley	plastid	81.43	83.21
TraesCS1B01G228500.1	Wheat	plastid	82.14	82.73
EER94466	Sorghum	plastid	75.71	79.1
Zm00001d047067_P001	Maize	plastid	77.14	78.83
Zm00001d029997_P002	Maize	plastid	74.29	77.61
Zm00001d002408_P002	Maize	plastid	73.57	76.87
HORVU6Hr1G016500.1	Barley	plastid	59.29	76.15
GSMUA_Achr11P...	Banana	plastid	69.29	67.83
GSMUA_Achr2P18220_001	Banana	plastid	63.57	63.57
PGSC0003DMT400004324	Potato	plastid	60.71	62.96
Solyc01g088610.2.1	Tomato	plastid	60.71	62.96
CDY48244	Canola	cytosol, plastid	45.71	59.81
KRH48902	Soybean	plastid	57.14	59.7
KRH66392	Soybean	plastid	56.43	58.96
AT3G60210.1	Thale cress	plastid	55.71	56.52
AT2G44650.1	Thale cress	plastid	52.86	53.24
CDY30480	Canola	plastid	50.71	51.08
CDY23449	Canola	plastid	50.71	51.08
Bra037640.1-P	Field mustard	plastid	50.71	51.08
Bra004853.1-P	Field mustard	plastid	50.0	50.36
VIT_15s0021g00830.t01	Wine grape	plastid	52.86	48.68

Protein Annotations

MapMan:1.2.1.2.3	MapMan:19.1.7.3	Gene3D:2.30.33.40	EntrezGene:4349426	ProteinID:AAL79700.1	ProteinID:AAP55067.1
ProteinID:BAF27263.2	ProteinID:BAT12115.1	InterPro:Chaperonin_GroES	InterPro:Chaperonin_GroES_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005759	GO:GO:0006457	GO:GO:0006950	GO:GO:0006986	GO:GO:0008150	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0046872	GO:GO:0051082	GO:GO:0051085	GO:GO:0051087
InterPro:GroES-like_sf	InterPro:IPR037124	EnsemblPlantsGene:Os10g0566700	EnsemblPlants:Os10t0566700-00	PFAM:PF00166	PRINTS:PR00297
PANTHER:PTHR10772	PANTHER:PTHR10772:SF13	UniProt:Q7XC09	SMART:SM00883	SUPFAM:SSF50129	SignalP:SignalP-noTM
UniParc:UPI000009E8A9	RefSeq:XP_015613059.1	SEG:seg	:	:	:

Description

Chaperonin Cpn10 family protein. (Os10t0566700-00)

Coordinates

chr10:+:22453084..22456620

Molecular Weight (calculated)

14764.8 Da

IEP (calculated)

7.416

GRAVY (calculated)

0.146

Length

140 amino acids

Sequence
(BLAST)

001: MAPSLLAAAA SPFLLHGAAA ASGSRRPLVA AAATGRRAAS SLRVAALKYD PSKVAPQSDR VLVRLEQIPE KSVGGVLLPK SAVKFERYLM GEILSVGADV
101: NEVEAGKKVL FSDINAYEVD LGTDEKHCFC RESDLLAVVE

Best Arabidopsis Sequence Match ( AT3G60210.1 )
(BLAST)

001: MASSFITVPK PFLSFPIKTN APTLPQQTLL GIRRNSFRIN AVSTKWEPAK VVPQADRVLV RLEVLPEKSS GGVLLPKSAV KFERYLTGEV VSVGSEVGEV
101: EPGKKVLFSD MSAYEVDFGT EDAKHCFCKE SDLLAIVQ

Arabidopsis Description

CPN10-110 kDa chaperonin 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1C2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.