CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30480	Canola	plastid	92.52	71.22
CDY23449	Canola	plastid	91.59	70.5
AT2G44650.1	Thale cress	plastid	84.11	64.75
Solyc01g088610.2.1	Tomato	plastid	74.77	59.26
PGSC0003DMT400004324	Potato	plastid	74.77	59.26
KRH48902	Soybean	plastid	68.22	54.48
KRH66392	Soybean	plastid	67.29	53.73
GSMUA_Achr2P18220_001	Banana	plastid	66.36	50.71
GSMUA_Achr11P...	Banana	plastid	64.49	48.25
EER94466	Sorghum	plastid	58.88	47.01
Zm00001d002408_P002	Maize	plastid	58.88	47.01
Zm00001d029997_P002	Maize	plastid	58.88	47.01
HORVU1Hr1G054630.2	Barley	plastid	59.81	46.72
TraesCS1A01G214600.1	Wheat	plastid	59.81	46.38
Os10t0566700-00	Rice	plastid	59.81	45.71
TraesCS1D01G217600.1	Wheat	plastid	59.81	45.71
TraesCS1B01G228500.1	Wheat	plastid	58.88	45.32
Zm00001d047067_P001	Maize	plastid	57.94	45.26
VIT_15s0021g00830.t01	Wine grape	plastid	56.07	39.47
HORVU6Hr1G016500.1	Barley	plastid	38.32	37.61
HORVU3Hr1G111860.1	Barley	plastid	31.78	31.48

Protein Annotations

MapMan:1.2.1.2.3	MapMan:19.1.7.3	Gene3D:2.30.33.40	GO:A0A078IFV3	UniProt:A0A078IFV3	EnsemblPlants:CDY48244
ProteinID:CDY48244	ProteinID:CDY48244.1	InterPro:Chaperonin_GroES	InterPro:Chaperonin_GroES_sf	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00089109001
InterPro:GroES-like_sf	InterPro:IPR037124	PFAM:PF00166	PRINTS:PR00297	PANTHER:PTHR10772	PANTHER:PTHR10772:SF13
SMART:SM00883	SUPFAM:SSF50129	UniParc:UPI0004EEC804	SEG:seg	:	:

Description

BnaC04g05030DBnaC04g05030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IFV3]

Coordinates

chrLK032762:-:28408..29319

Molecular Weight (calculated)

11583.0 Da

IEP (calculated)

5.709

GRAVY (calculated)

0.152

Length

107 amino acids

Sequence
(BLAST)

001: MICFFPHVSS ISTKWEPTKV VPQADRVLVR LEELAQTTSG GVLLPKAAVK FERYLTGEVV SVGSEVGQQV GPGKKVLFSD VSAYEVDLGT GARHCFCKES
101: DLLALVE

Best Arabidopsis Sequence Match ( AT2G44650.1 )
(BLAST)

001: MASTFVCSLP NPFFAFPVKA TTPSTANHTL LGSRRGCLRI KAISTKWEPT KVVPQADRVL VRLEDLPIKS SGGVLLPKAA VKFERYLTGE IISVGSEVGQ
101: QVGPGKRVLF SDVSAYEVDL GTDARHCFCK ESDLLALVE

Arabidopsis Description

CPN10-210 kDa chaperonin 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O80504]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.