Factsheet for TraesCS1B01G228500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G392100.1
TraesCS1B01G420200.1
TraesCS1D01G400200.2
TraesCS3A01G270400.1
TraesCS3A01G305500.1
TraesCS3B01G304200.1
TraesCS3B01G331000.1
TraesCS3D01G270200.1
TraesCS3D01G296400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60210.1	TraesCS1A01G392100.1	AT1G52240.1	21798944
AT3G60210.1	TraesCS1B01G420200.1	AT1G52240.1	21798944
AT3G60210.1	TraesCS1D01G400200.2	AT1G52240.1	21798944
AT3G60210.1	TraesCS3A01G270400.1	AT1G52240.1	21798944
AT3G60210.1	TraesCS3A01G305500.1	AT1G52240.1	21798944
AT3G60210.1	TraesCS3B01G304200.1	AT1G52240.1	21798944
AT3G60210.1	TraesCS3B01G331000.1	AT1G52240.1	21798944
AT3G60210.1	TraesCS3D01G270200.1	AT1G52240.1	21798944
AT3G60210.1	TraesCS3D01G296400.1	AT1G52240.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G054630.2	Barley	plastid	94.24	95.62
TraesCS1A01G214600.1	Wheat	plastid	94.24	94.93
TraesCS1D01G217600.1	Wheat	plastid	93.53	92.86
HORVU6Hr1G016500.1	Barley	plastid	69.78	88.99
Os10t0566700-00	Rice	plastid	82.73	82.14
EER94466	Sorghum	plastid	69.78	72.39
Zm00001d047067_P001	Maize	plastid	71.22	72.26
Zm00001d029997_P002	Maize	plastid	68.35	70.9
Zm00001d002408_P002	Maize	plastid	67.63	70.15
GSMUA_Achr11P...	Banana	plastid	65.47	63.64
PGSC0003DMT400004324	Potato	plastid	59.71	61.48
Solyc01g088610.2.1	Tomato	plastid	59.71	61.48
GSMUA_Achr2P18220_001	Banana	plastid	61.87	61.43
CDY48244	Canola	cytosol, plastid	45.32	58.88
AT3G60210.1	Thale cress	plastid	57.55	57.97
KRH48902	Soybean	plastid	55.4	57.46
KRH66392	Soybean	plastid	55.4	57.46
AT2G44650.1	Thale cress	plastid	51.8	51.8
CDY23449	Canola	plastid	51.08	51.08
CDY30480	Canola	plastid	49.64	49.64
Bra037640.1-P	Field mustard	plastid	49.64	49.64
Bra004853.1-P	Field mustard	plastid	49.64	49.64
VIT_15s0021g00830.t01	Wine grape	plastid	50.36	46.05

Protein Annotations

MapMan:1.2.1.2.3	MapMan:19.1.7.3	Gene3D:2.30.33.40	InterPro:Chaperonin_GroES	InterPro:Chaperonin_GroES_sf	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987
InterPro:GroES-like_sf	InterPro:IPR037124	PFAM:PF00166	PRINTS:PR00297	PANTHER:PTHR10772	PANTHER:PTHR10772:SF13
SMART:SM00883	SUPFAM:SSF50129	EnsemblPlantsGene:TraesCS1B01G228500	EnsemblPlants:TraesCS1B01G228500.1	TIGR:cd00320	SEG:seg

Description

No Description!

Coordinates

chr1B:-:409678016..409680918

Molecular Weight (calculated)

14738.9 Da

IEP (calculated)

8.060

GRAVY (calculated)

0.112

Length

139 amino acids

Sequence
(BLAST)

001: MAPSLLAAAA SPFLIHGATG STSRRPVAAV APGRRAASSV RMRAAIKCDP SKVEPQSDRV LVRLETIPEK SAGGVLLPKS AVKFERYLMG EILSVGVDVS
101: EVEAGKKVLF SDINAYEVDL GTEEKHCFCR ESDLLAVVA

Best Arabidopsis Sequence Match ( AT3G60210.1 )
(BLAST)

001: MASSFITVPK PFLSFPIKTN APTLPQQTLL GIRRNSFRIN AVSTKWEPAK VVPQADRVLV RLEVLPEKSS GGVLLPKSAV KFERYLTGEV VSVGSEVGEV
101: EPGKKVLFSD MSAYEVDFGT EDAKHCFCKE SDLLAIVQ

Arabidopsis Description

CPN10-110 kDa chaperonin 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1C2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.