Factsheet for VIT_15s0021g00830.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g04990.t01
VIT_08s0040g01150.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60210.1	VIT_01s0011g04990.t01	AT1G23100.1	21798944
AT3G60210.1	VIT_08s0040g01150.t01	AT1G23100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g088610.2.1	Tomato	plastid	59.21	66.67
PGSC0003DMT400004324	Potato	plastid	59.21	66.67
KRH48902	Soybean	plastid	51.32	58.21
KRH66392	Soybean	plastid	51.32	58.21
AT3G60210.1	Thale cress	plastid	52.63	57.97
AT2G44650.1	Thale cress	plastid	51.97	56.83
CDY48244	Canola	cytosol, plastid	39.47	56.07
GSMUA_Achr11P...	Banana	plastid	50.0	53.15
Os10t0566700-00	Rice	plastid	48.68	52.86
Bra037640.1-P	Field mustard	plastid	48.03	52.52
CDY30480	Canola	plastid	48.03	52.52
Zm00001d029997_P002	Maize	plastid	46.05	52.24
GSMUA_Achr2P18220_001	Banana	plastid	48.03	52.14
EER94466	Sorghum	plastid	45.39	51.49
Zm00001d002408_P002	Maize	plastid	45.39	51.49
Zm00001d047067_P001	Maize	plastid	46.05	51.09
CDY23449	Canola	plastid	46.71	51.08
TraesCS1A01G214600.1	Wheat	plastid	46.05	50.72
HORVU1Hr1G054630.2	Barley	plastid	45.39	50.37
TraesCS1B01G228500.1	Wheat	plastid	46.05	50.36
TraesCS1D01G217600.1	Wheat	plastid	46.05	50.0
Bra004853.1-P	Field mustard	plastid	45.39	49.64
HORVU6Hr1G016500.1	Barley	plastid	34.21	47.71
HORVU3Hr1G111860.1	Barley	plastid	29.61	41.67

Protein Annotations

MapMan:1.2.1.2.3	MapMan:19.1.7.3	Gene3D:2.30.33.40	ProteinID:CCB43926	ProteinID:CCB43926.1	InterPro:Chaperonin_GroES
InterPro:Chaperonin_GroES_sf	UniProt:F6GVE3	EMBL:FN594952	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759
GO:GO:0006457	GO:GO:0006950	GO:GO:0006986	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0046872	GO:GO:0051082	GO:GO:0051085	GO:GO:0051087	InterPro:GroES-like_sf
InterPro:IPR037124	PFAM:PF00166	PANTHER:PTHR10772	PANTHER:PTHR10772:SF13	SMART:SM00883	SUPFAM:SSF50129
UniParc:UPI000210A608	ArrayExpress:VIT_15s0021g00830	EnsemblPlantsGene:VIT_15s0021g00830	EnsemblPlants:VIT_15s0021g00830.t01	RefSeq:XP_002267346	RefSeq:XP_002267346.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr15:-:10655522..10660478

Molecular Weight (calculated)

16721.6 Da

IEP (calculated)

10.515

GRAVY (calculated)

0.059

Length

152 amino acids

Sequence
(BLAST)

001: MASTFITLAR PFSSHKPHTP SPSKRLLGLR SSALKINAIA KKWEPTKVVP QADRVLIRLQ DLPEKSSGGV LLPKSAVKFE RYLMGEILSI GADVGEVEAG
101: KKVLFSDINA YEMVDTAFAK KVTCWLWLSR ARAYGKSFTR GQLCICALIL AT

Best Arabidopsis Sequence Match ( AT3G60210.1 )
(BLAST)

001: MASSFITVPK PFLSFPIKTN APTLPQQTLL GIRRNSFRIN AVSTKWEPAK VVPQADRVLV RLEVLPEKSS GGVLLPKSAV KFERYLTGEV VSVGSEVGEV
101: EPGKKVLFSD MSAYEVDFGT EDAKHCFCKE SDLLAIVQ

Arabidopsis Description

CPN10-110 kDa chaperonin 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1C2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.