CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89335
KRH50384

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60210.1	KRG89335	AT1G23100.1	21798944
AT3G60210.1	KRH50384	AT1G23100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66392	Soybean	plastid	97.01	97.01
CDY48244	Canola	cytosol, plastid	54.48	68.22
PGSC0003DMT400004324	Potato	plastid	68.66	68.15
Solyc01g088610.2.1	Tomato	plastid	66.42	65.93
AT3G60210.1	Thale cress	plastid	62.69	60.87
AT2G44650.1	Thale cress	plastid	62.69	60.43
Bra037640.1-P	Field mustard	plastid	60.45	58.27
CDY23449	Canola	plastid	60.45	58.27
CDY30480	Canola	plastid	60.45	58.27
GSMUA_Achr11P...	Banana	plastid	61.94	58.04
Os10t0566700-00	Rice	plastid	59.7	57.14
Bra004853.1-P	Field mustard	plastid	58.96	56.83
TraesCS1A01G214600.1	Wheat	plastid	58.21	56.52
HORVU1Hr1G054630.2	Barley	plastid	57.46	56.2
Zm00001d029997_P002	Maize	plastid	55.97	55.97
GSMUA_Achr2P18220_001	Banana	plastid	58.21	55.71
TraesCS1B01G228500.1	Wheat	plastid	57.46	55.4
Zm00001d002408_P002	Maize	plastid	55.22	55.22
TraesCS1D01G217600.1	Wheat	plastid	57.46	55.0
EER94466	Sorghum	plastid	54.48	54.48
Zm00001d047067_P001	Maize	plastid	55.22	54.01
VIT_15s0021g00830.t01	Wine grape	plastid	58.21	51.32
HORVU6Hr1G016500.1	Barley	plastid	39.55	48.62
HORVU3Hr1G111860.1	Barley	plastid	30.6	37.96

Protein Annotations

MapMan:1.2.1.2.3	EntrezGene:100500567	MapMan:19.1.7.3	Gene3D:2.30.33.40	EMBL:ACUP02004307	EMBL:BT091506
UniProt:C6T249	InterPro:Chaperonin_GroES	InterPro:Chaperonin_GroES_sf	EnsemblPlantsGene:GLYMA_07G120400	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005759	GO:GO:0006457	GO:GO:0006950	GO:GO:0006986	GO:GO:0008150	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0046872	GO:GO:0051082	GO:GO:0051085	GO:GO:0051087
InterPro:GroES-like_sf	InterPro:IPR037124	EnsemblPlants:KRH48902	ProteinID:KRH48902	ProteinID:KRH48902.1	PFAM:PF00166
PANTHER:PTHR10772	PANTHER:PTHR10772:SF13	SMART:SM00883	SUPFAM:SSF50129	UniParc:UPI0001AE61A4	:

Description

hypothetical protein

Coordinates

chr7:+:13866801..13871121

Molecular Weight (calculated)

14728.0 Da

IEP (calculated)

8.724

GRAVY (calculated)

0.025

Length

134 amino acids

Sequence
(BLAST)

001: MASTFLTLPT PFLHKTNAIT FSDKRPSFLQ RSSLKINAIT KKWEPTKVVP QADRVLVRLE ELSDKTVGGV LLPKSAVKFE RYLVGEILTV GAEAGELKAG
101: TKVLFTDMNA YEVDLGTDAK HCFCKASDLL AVVE

Best Arabidopsis Sequence Match ( AT3G60210.1 )
(BLAST)

001: MASSFITVPK PFLSFPIKTN APTLPQQTLL GIRRNSFRIN AVSTKWEPAK VVPQADRVLV RLEVLPEKSS GGVLLPKSAV KFERYLTGEV VSVGSEVGEV
101: EPGKKVLFSD MSAYEVDFGT EDAKHCFCKE SDLLAIVQ

Arabidopsis Description

CPN10-110 kDa chaperonin 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1C2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.