CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0011g04990.t01	Wine grape	mitochondrion	83.51	83.51
KRH66747	Soybean	cytosol, mitochondrion	81.44	81.44
KRG95075	Soybean	mitochondrion	80.41	80.41
AT1G23100.1	Thale cress	cytosol, mitochondrion	79.38	79.38
PGSC0003DMT400073969	Potato	cytosol, mitochondrion	78.35	78.35
Solyc05g056390.2.1	Tomato	plastid	77.32	77.32
CDY04743	Canola	mitochondrion	76.29	76.29
Solyc07g008800.2.1	Tomato	plastid	76.29	76.29
KRG89335	Soybean	endoplasmic reticulum, mitochondrion	95.88	76.23
VIT_08s0040g01150.t01	Wine grape	cytosol, mitochondrion	75.26	75.26
CDY21417	Canola	mitochondrion, plastid	74.23	74.23
Bra024563.1-P	Field mustard	mitochondrion	65.98	73.56
PGSC0003DMT400060280	Potato	mitochondrion	75.26	70.87
KRH65868	Soybean	mitochondrion	58.76	61.96
KRH55636	Soybean	cytosol, mitochondrion, nucleus	43.3	46.15

Protein Annotations

EntrezGene:100527505	MapMan:19.1.7.3	Gene3D:2.30.33.40	EMBL:ACUP02004688	EMBL:BT092352	UniProt:C6T4J1
InterPro:Chaperonin_GroES	InterPro:Chaperonin_GroES_sf	EnsemblPlantsGene:GLYMA_07G219000	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759
GO:GO:0006457	GO:GO:0006950	GO:GO:0006986	GO:GO:0008150	GO:GO:0009987	GO:GO:0046872
GO:GO:0051082	GO:GO:0051085	GO:GO:0051087	InterPro:GroES-like_sf	InterPro:IPR037124	EnsemblPlants:KRH50384
ProteinID:KRH50384	ProteinID:KRH50384.1	PFAM:PF00166	PRINTS:PR00297	PANTHER:PTHR10772	PANTHER:PTHR10772:SF25
SMART:SM00883	SUPFAM:SSF50129	UniParc:UPI0001B159D7	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:39256812..39257746

Molecular Weight (calculated)

10585.9 Da

IEP (calculated)

6.792

GRAVY (calculated)

-0.133

Length

97 amino acids

Sequence
(BLAST)

1: MAKRLIPCFN RILVEKIVPP SKTSAGILLP EKSSQLNSGK VIAVGPGSRD QAGNLIPVSV KEGDHVLLPE YGGTQIKLDD KEFHLFRDED ILGILHD

Best Arabidopsis Sequence Match ( AT1G23100.1 )
(BLAST)

1: MAKRLIPTLN RVLVEKILPP SKTVSGILLP EKSSQLNSGR VIAVGPGARD RAGNLIPVSV KEGDNVLLPE FGGTQVKLGE KEFLLYRDED IMATLHE

Arabidopsis Description

GroES-like family protein [Source:UniProtKB/TrEMBL;Acc:Q8LDC9]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.