Factsheet for Solyc07g008800.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073969	Potato	cytosol, mitochondrion	96.91	96.91
Solyc05g056390.2.1	Tomato	plastid	95.88	95.88
VIT_01s0011g04990.t01	Wine grape	mitochondrion	80.41	80.41
VIT_08s0040g01150.t01	Wine grape	cytosol, mitochondrion	80.41	80.41
KRH50384	Soybean	mitochondrion	76.29	76.29
AT1G23100.1	Thale cress	cytosol, mitochondrion	75.26	75.26
CDY04743	Canola	mitochondrion	75.26	75.26
CDY21417	Canola	mitochondrion, plastid	73.2	73.2
Bra024563.1-P	Field mustard	mitochondrion	64.95	72.41
KRG89335	Soybean	endoplasmic reticulum, mitochondrion	78.35	62.3

Protein Annotations

MapMan:19.1.7.3	Gene3D:2.30.33.40	InterPro:Chaperonin_GroES	InterPro:Chaperonin_GroES_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005759	GO:GO:0006457	GO:GO:0006950	GO:GO:0006986	GO:GO:0008150	GO:GO:0009987
GO:GO:0046872	GO:GO:0051082	GO:GO:0051085	GO:GO:0051087	InterPro:GroES-like_sf	InterPro:IPR037124
UniProt:K4CBZ9	PFAM:PF00166	PRINTS:PR00297	PANTHER:PTHR10772	PANTHER:PTHR10772:SF25	SMART:SM00883
SUPFAM:SSF50129	EnsemblPlantsGene:Solyc07g008800.2	EnsemblPlants:Solyc07g008800.2.1	UniParc:UPI000276B604	:	:

Description

No Description!

Coordinates

chr7:-:3769450..3771210

Molecular Weight (calculated)

10428.8 Da

IEP (calculated)

8.935

GRAVY (calculated)

-0.194

Length

97 amino acids

Sequence
(BLAST)

1: MAKRLIPTIN RVLIEKITAP AKTSAGILLP EKSAKLNSGK VVAVGPGLHD KTGNLIPTAV KEGDTVLLPE YGGTQVKLGE KEYHLYRDED ILGTLHD

Best Arabidopsis Sequence Match ( AT1G14980.1 )
(BLAST)

1: MMKRLIPTFN RILVQRVIQP AKTESGILLP EKSSKLNSGK VIAVGPGSRD KDGKLIPVSV KEGDTVLLPE YGGTQVKLGE NEYHLFRDED VLGTLHED

Arabidopsis Description

CPN1010 kDa chaperonin, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P34893]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.