Factsheet for PGSC0003DMT400073969

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g008800.2.1	Tomato	plastid	96.91	96.91
PGSC0003DMT400060280	Potato	mitochondrion	93.81	88.35
VIT_01s0011g04990.t01	Wine grape	mitochondrion	79.38	79.38
VIT_08s0040g01150.t01	Wine grape	cytosol, mitochondrion	79.38	79.38
KRH50384	Soybean	mitochondrion	78.35	78.35
AT1G23100.1	Thale cress	cytosol, mitochondrion	76.29	76.29
CDY04743	Canola	mitochondrion	76.29	76.29
CDY21417	Canola	mitochondrion, plastid	74.23	74.23
Bra024563.1-P	Field mustard	mitochondrion	63.92	71.26
KRG89335	Soybean	endoplasmic reticulum, mitochondrion	78.35	62.3

Protein Annotations

EntrezGene:102587986	MapMan:19.1.7.3	Gene3D:2.30.33.40	InterPro:Chaperonin_GroES	InterPro:Chaperonin_GroES_sf	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987
InterPro:GroES-like_sf	InterPro:IPR037124	UniProt:M1CSX6	PFAM:PF00166	EnsemblPlantsGene:PGSC0003DMG400028744	PGSC:PGSC0003DMG400028744
EnsemblPlants:PGSC0003DMT400073969	PRINTS:PR00297	PANTHER:PTHR10772	PANTHER:PTHR10772:SF25	SMART:SM00883	SUPFAM:SSF50129
UniParc:UPI0002956350	RefSeq:XP_006361644.1	:	:	:	:

Description

Small molecular heat shock protein 10 [Source:PGSC_GENE;Acc:PGSC0003DMG400028744]

Coordinates

chr7:-:6434710..6436546

Molecular Weight (calculated)

10426.8 Da

IEP (calculated)

8.992

GRAVY (calculated)

-0.156

Length

97 amino acids

Sequence
(BLAST)

1: MAKRLIPTLN RILIEKITAP AKTSAGILLP EKSAKLNSGK VVAVGPGLHD KTGNLIPTAV KEGDTVLLPE YGGTQVKLGE KEFHLYRDED ILGTLHD

Best Arabidopsis Sequence Match ( AT1G14980.1 )
(BLAST)

1: MMKRLIPTFN RILVQRVIQP AKTESGILLP EKSSKLNSGK VIAVGPGSRD KDGKLIPVSV KEGDTVLLPE YGGTQVKLGE NEYHLFRDED VLGTLHED

Arabidopsis Description

CPN1010 kDa chaperonin, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P34893]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.