Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 6
- cytosol 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra018982.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G23100.1 | Bra018982.1-P | AT1G52695.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04743 | Canola | mitochondrion | 93.1 | 83.51 |
| CDY21417 | Canola | mitochondrion, plastid | 93.1 | 83.51 |
| AT1G23100.1 | Thale cress | cytosol, mitochondrion | 89.66 | 80.41 |
| KRH50384 | Soybean | mitochondrion | 73.56 | 65.98 |
| Solyc05g056390.2.1 | Tomato | plastid | 73.56 | 65.98 |
| VIT_01s0011g04990.t01 | Wine grape | mitochondrion | 73.56 | 65.98 |
| Solyc07g008800.2.1 | Tomato | plastid | 72.41 | 64.95 |
| Bra016677.1-P | Field mustard | mitochondrion | 72.41 | 64.29 |
| PGSC0003DMT400073969 | Potato | cytosol, mitochondrion | 71.26 | 63.92 |
| Bra026789.1-P | Field mustard | mitochondrion | 71.26 | 63.27 |
| VIT_08s0040g01150.t01 | Wine grape | cytosol, mitochondrion | 70.11 | 62.89 |
| PGSC0003DMT400060280 | Potato | mitochondrion | 73.56 | 62.14 |
| KRG89335 | Soybean | endoplasmic reticulum, mitochondrion | 72.41 | 51.64 |
| Bra026173.1-P | Field mustard | mitochondrion | 72.41 | 45.99 |
Protein Annotations
| MapMan:19.1.7.3 | Gene3D:2.30.33.40 | EnsemblPlantsGene:Bra024563 | EnsemblPlants:Bra024563.1 | EnsemblPlants:Bra024563.1-P | InterPro:Chaperonin_GroES |
| InterPro:Chaperonin_GroES_sf | InterPro:Chaprnonin_Cpn10_CS | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006457 |
| GO:GO:0008150 | GO:GO:0009987 | InterPro:GroES-like_sf | InterPro:IPR037124 | UniProt:M4E708 | PFAM:PF00166 |
| PRINTS:PR00297 | ScanProsite:PS00681 | PANTHER:PTHR10772 | PANTHER:PTHR10772:SF25 | SMART:SM00883 | SUPFAM:SSF50129 |
| UniParc:UPI0002542A09 | : | : | : | : | : |
Description
AT1G23100 (E=3e-038) | 10 kDa chaperonin, putative
Coordinates
chrA09:-:24387712..24388050
Molecular Weight (calculated)
9389.5 Da
IEP (calculated)
10.279
GRAVY (calculated)
-0.106
Length
87 amino acids
Sequence
(BLAST)
(BLAST)
1: MAKRLIPTLN RVLVEKNLQP SKTVSGILLP ETSSQLNSGR VIAVGPGARD RTGNLIPVSV KEGDNVLLPE FGGTQVKLGE KEYMFLT
1: MAKRLIPTLN RVLVEKILPP SKTVSGILLP EKSSQLNSGR VIAVGPGARD RAGNLIPVSV KEGDNVLLPE FGGTQVKLGE KEFLLYRDED IMATLHE
Arabidopsis Description
GroES-like family protein [Source:UniProtKB/TrEMBL;Acc:Q8LDC9]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.