Factsheet for Solyc05g056390.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
plastid: 26371478

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g008800.2.1	Tomato	plastid	95.88	95.88
PGSC0003DMT400060280	Potato	mitochondrion	94.85	89.32
VIT_01s0011g04990.t01	Wine grape	mitochondrion	79.38	79.38
VIT_08s0040g01150.t01	Wine grape	cytosol, mitochondrion	79.38	79.38
CDY04743	Canola	mitochondrion	78.35	78.35
AT1G23100.1	Thale cress	cytosol, mitochondrion	77.32	77.32
KRH50384	Soybean	mitochondrion	77.32	77.32
CDY21417	Canola	mitochondrion, plastid	76.29	76.29
Bra024563.1-P	Field mustard	mitochondrion	65.98	73.56
KRG89335	Soybean	endoplasmic reticulum, mitochondrion	77.32	61.48

Protein Annotations

MapMan:19.1.7.3	Gene3D:2.30.33.40	InterPro:Chaperonin_GroES	InterPro:Chaperonin_GroES_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005759	GO:GO:0006457	GO:GO:0006950	GO:GO:0006986	GO:GO:0008150	GO:GO:0009987
GO:GO:0046872	GO:GO:0051082	GO:GO:0051085	GO:GO:0051087	InterPro:GroES-like_sf	InterPro:IPR037124
UniProt:K4C2W3	PFAM:PF00166	PRINTS:PR00297	PANTHER:PTHR10772	PANTHER:PTHR10772:SF25	SMART:SM00883
SUPFAM:SSF50129	EnsemblPlantsGene:Solyc05g056390.2	EnsemblPlants:Solyc05g056390.2.1	UniParc:UPI000276570F	:	:

Description

No Description!

Coordinates

chr5:+:65712345..65713607

Molecular Weight (calculated)

10414.7 Da

IEP (calculated)

7.783

GRAVY (calculated)

-0.181

Length

97 amino acids

Sequence
(BLAST)

1: MAKRLIPTLN RVLIEKITAP AKTSAGILLP ENSSKLNSGK VVAVGPGLHD KTGNLIPTAV KEGDTVLLPE YGGTQVKLGE KEFHLYRDED ILGTLHD

Best Arabidopsis Sequence Match ( AT1G23100.1 )
(BLAST)

1: MAKRLIPTLN RVLVEKILPP SKTVSGILLP EKSSQLNSGR VIAVGPGARD RAGNLIPVSV KEGDNVLLPE FGGTQVKLGE KEFLLYRDED IMATLHE

Arabidopsis Description

GroES-like family protein [Source:UniProtKB/TrEMBL;Acc:Q8LDC9]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.