Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G086590.2 | |
| HORVU3Hr1G062030.1 | |
| HORVU3Hr1G073200.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G60210.1 | HORVU1Hr1G086590.2 | AT1G52240.1 | 21798944 |
| AT3G60210.1 | HORVU3Hr1G062030.1 | AT1G52240.1 | 21798944 |
| AT3G60210.1 | HORVU3Hr1G073200.1 | AT1G52240.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G016500.1 | Barley | plastid | 48.15 | 47.71 |
| HORVU1Hr1G054630.2 | Barley | plastid | 47.22 | 37.23 |
| GSMUA_Achr11P... | Banana | plastid | 48.15 | 36.36 |
| Solyc01g088610.2.1 | Tomato | plastid | 44.44 | 35.56 |
| EER94466 | Sorghum | plastid | 43.52 | 35.07 |
| Zm00001d047067_P001 | Maize | plastid | 44.44 | 35.04 |
| GSMUA_Achr2P18220_001 | Banana | plastid | 45.37 | 35.0 |
| PGSC0003DMT400004324 | Potato | plastid | 43.52 | 34.81 |
| Zm00001d002408_P002 | Maize | plastid | 41.67 | 33.58 |
| Zm00001d029997_P002 | Maize | plastid | 41.67 | 33.58 |
| AT3G60210.1 | Thale cress | plastid | 40.74 | 31.88 |
| CDY48244 | Canola | cytosol, plastid | 31.48 | 31.78 |
| KRH48902 | Soybean | plastid | 37.96 | 30.6 |
| KRH66392 | Soybean | plastid | 37.04 | 29.85 |
| VIT_15s0021g00830.t01 | Wine grape | plastid | 41.67 | 29.61 |
| AT2G44650.1 | Thale cress | plastid | 37.96 | 29.5 |
| CDY30480 | Canola | plastid | 35.19 | 27.34 |
| CDY23449 | Canola | plastid | 35.19 | 27.34 |
| Bra037640.1-P | Field mustard | plastid | 35.19 | 27.34 |
| Bra004853.1-P | Field mustard | plastid | 34.26 | 26.62 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G111860.1 | EnsemblPlantsGene:HORVU3Hr1G111860 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006457 | GO:GO:0008150 | GO:GO:0009987 | InterPro:Chaperonin_GroES | PANTHER:PTHR10772 | PANTHER:PTHR10772:SF13 |
| SEG:seg | UniParc:UPI000B47752C | UniProt:A0A287MQ06 | MapMan:1.2.1.2.3 | MapMan:19.1.7.3 | : |
Description
No Description!
Coordinates
chrchr3H:-:684779326..684780328
Molecular Weight (calculated)
12488.3 Da
IEP (calculated)
12.083
GRAVY (calculated)
-0.626
Length
108 amino acids
Sequence
(BLAST)
(BLAST)
001: WPLPPRRRHL TLPPPRRRRE HQPQAGRRTR PPRRILRFVR WSRSPTGCSS VSRLSERSLR ELVELQKSAG GVLLPKSAVK FERYLMGEIL SVGVDVSEVE
101: AGKKCCFF
101: AGKKCCFF
001: MASSFITVPK PFLSFPIKTN APTLPQQTLL GIRRNSFRIN AVSTKWEPAK VVPQADRVLV RLEVLPEKSS GGVLLPKSAV KFERYLTGEV VSVGSEVGEV
101: EPGKKVLFSD MSAYEVDFGT EDAKHCFCKE SDLLAIVQ
101: EPGKKVLFSD MSAYEVDFGT EDAKHCFCKE SDLLAIVQ
Arabidopsis Description
CPN10-110 kDa chaperonin 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1C2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.