Factsheet for Solyc01g088610.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g056390.2.1
Solyc07g008800.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60210.1	Solyc05g056390.2.1	AT1G23100.1	21798944
AT3G60210.1	Solyc07g008800.2.1	AT1G23100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004324	Potato	plastid	97.04	97.04
CDY48244	Canola	cytosol, plastid	59.26	74.77
AT3G60210.1	Thale cress	plastid	69.63	68.12
AT2G44650.1	Thale cress	plastid	69.63	67.63
KRH48902	Soybean	plastid	65.93	66.42
KRH66392	Soybean	plastid	65.93	66.42
CDY23449	Canola	plastid	68.15	66.19
Bra037640.1-P	Field mustard	plastid	67.41	65.47
CDY30480	Canola	plastid	67.41	65.47
GSMUA_Achr2P18220_001	Banana	plastid	67.41	65.0
Bra004853.1-P	Field mustard	plastid	65.19	63.31
GSMUA_Achr11P...	Banana	plastid	66.67	62.94
EER94466	Sorghum	plastid	60.74	61.19
Os10t0566700-00	Rice	plastid	62.96	60.71
Zm00001d047067_P001	Maize	plastid	61.48	60.58
Zm00001d029997_P002	Maize	plastid	60.0	60.45
TraesCS1A01G214600.1	Wheat	plastid	61.48	60.14
HORVU1Hr1G054630.2	Barley	plastid	60.74	59.85
TraesCS1B01G228500.1	Wheat	plastid	61.48	59.71
Zm00001d002408_P002	Maize	plastid	59.26	59.7
VIT_15s0021g00830.t01	Wine grape	plastid	66.67	59.21
TraesCS1D01G217600.1	Wheat	plastid	60.74	58.57
HORVU6Hr1G016500.1	Barley	plastid	40.74	50.46
HORVU3Hr1G111860.1	Barley	plastid	35.56	44.44

Protein Annotations

MapMan:1.2.1.2.3	MapMan:19.1.7.3	Gene3D:2.30.33.40	InterPro:Chaperonin_GroES	InterPro:Chaperonin_GroES_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005759	GO:GO:0006457	GO:GO:0006950	GO:GO:0006986	GO:GO:0008150
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0046872	GO:GO:0051082	GO:GO:0051085
GO:GO:0051087	InterPro:GroES-like_sf	InterPro:IPR037124	UniProt:K4AYQ1	PFAM:PF00166	PRINTS:PR00297
PANTHER:PTHR10772	PANTHER:PTHR10772:SF13	SMART:SM00883	SUPFAM:SSF50129	EnsemblPlantsGene:Solyc01g088610.2	EnsemblPlants:Solyc01g088610.2.1
UniParc:UPI0002761967	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:83371858..83375171

Molecular Weight (calculated)

14931.1 Da

IEP (calculated)

8.223

GRAVY (calculated)

-0.110

Length

135 amino acids

Sequence
(BLAST)

001: MASTFLTLAK PFTSHSTNLP SFSPQRPIGL RRNSLRINAI SQKWEPTKVV PQADRVLIRL EELPEKSAGG VLLPKSAVKF ERYLMGEVLS VGSDVAQVET
101: GKKVLFSDIN AYEVDLGTDA RHCFCKESEL LALVE

Best Arabidopsis Sequence Match ( AT3G60210.1 )
(BLAST)

001: MASSFITVPK PFLSFPIKTN APTLPQQTLL GIRRNSFRIN AVSTKWEPAK VVPQADRVLV RLEVLPEKSS GGVLLPKSAV KFERYLTGEV VSVGSEVGEV
101: EPGKKVLFSD MSAYEVDFGT EDAKHCFCKE SDLLAIVQ

Arabidopsis Description

CPN10-110 kDa chaperonin 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1C2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.