CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES19937
KXG33101
OQU87589

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60210.1	EES19937	AT1G52240.1	21798944
AT3G60210.1	KXG33101	AT1G52240.1	21798944
AT3G60210.1	OQU87589	AT1G52240.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047067_P001	Maize	plastid	91.04	89.05
Zm00001d029997_P002	Maize	plastid	84.33	84.33
Zm00001d002408_P002	Maize	plastid	83.58	83.58
Os10t0566700-00	Rice	plastid	79.1	75.71
TraesCS1A01G214600.1	Wheat	plastid	74.63	72.46
HORVU1Hr1G054630.2	Barley	plastid	73.88	72.26
TraesCS1D01G217600.1	Wheat	plastid	73.88	70.71
TraesCS1B01G228500.1	Wheat	plastid	72.39	69.78
GSMUA_Achr11P...	Banana	plastid	69.4	65.03
HORVU6Hr1G016500.1	Barley	plastid	50.75	62.39
Solyc01g088610.2.1	Tomato	plastid	61.19	60.74
GSMUA_Achr2P18220_001	Banana	plastid	63.43	60.71
PGSC0003DMT400004324	Potato	plastid	60.45	60.0
CDY48244	Canola	cytosol, plastid	47.01	58.88
AT3G60210.1	Thale cress	plastid	60.45	58.7
KRH66392	Soybean	plastid	54.48	54.48
KRH48902	Soybean	plastid	54.48	54.48
CDY23449	Canola	plastid	55.97	53.96
CDY30480	Canola	plastid	55.22	53.24
Bra037640.1-P	Field mustard	plastid	55.22	53.24
AT2G44650.1	Thale cress	plastid	54.48	52.52
Bra004853.1-P	Field mustard	plastid	52.99	51.08
VIT_15s0021g00830.t01	Wine grape	plastid	51.49	45.39
HORVU3Hr1G111860.1	Barley	plastid	35.07	43.52

Protein Annotations

MapMan:1.2.1.2.3	MapMan:19.1.7.3	Gene3D:2.30.33.40	EntrezGene:8058055	UniProt:C5WRF6	InterPro:Chaperonin_GroES
InterPro:Chaperonin_GroES_sf	EnsemblPlants:EER94466	ProteinID:EER94466	ProteinID:EER94466.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005759	GO:GO:0006457	GO:GO:0006950	GO:GO:0006986	GO:GO:0008150	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0046872	GO:GO:0051082	GO:GO:0051085	GO:GO:0051087
InterPro:GroES-like_sf	InterPro:IPR037124	PFAM:PF00166	PRINTS:PR00297	PANTHER:PTHR10772	PANTHER:PTHR10772:SF13
SMART:SM00883	EnsemblPlantsGene:SORBI_3001G293300	SUPFAM:SSF50129	unigene:Sbi.2538	UniParc:UPI0001A82EC0	RefSeq:XP_002467468.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:57080138..57082645

Molecular Weight (calculated)

14265.3 Da

IEP (calculated)

8.206

GRAVY (calculated)

0.110

Length

134 amino acids

Sequence
(BLAST)

001: MAPSLLAAVS ASPFLLAGSG SSRRPLGAAP IRRAGLRVAA LKYDPAKVAP QNDRVLVRIQ QIPEKSAGGV LLPKSAVKFE RYLMGEILSV GADVSEVEAG
101: KKVLFSDINA YEVDLGTDEK HCFCRESDLL ALVE

Best Arabidopsis Sequence Match ( AT3G60210.1 )
(BLAST)

001: MASSFITVPK PFLSFPIKTN APTLPQQTLL GIRRNSFRIN AVSTKWEPAK VVPQADRVLV RLEVLPEKSS GGVLLPKSAV KFERYLTGEV VSVGSEVGEV
101: EPGKKVLFSD MSAYEVDFGT EDAKHCFCKE SDLLAIVQ

Arabidopsis Description

CPN10-110 kDa chaperonin 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1C2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.