Factsheet for Zm00001d002408_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d009549_P002
Zm00001d012691_P001
Zm00001d038989_P002
Zm00001d043383_P001
Zm00001d043889_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60210.1	Zm00001d009549_P002	AT1G52240.1	21798944
AT3G60210.1	Zm00001d012691_P001	AT1G52240.1	21798944
AT3G60210.1	Zm00001d038989_P002	AT1G52240.1	21798944
AT3G60210.1	Zm00001d043383_P001	AT1G52240.1	21798944
AT3G60210.1	Zm00001d043889_P001	AT1G52240.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029997_P002	Maize	plastid	98.51	98.51
EER94466	Sorghum	plastid	83.58	83.58
Zm00001d047067_P001	Maize	plastid	84.33	82.48
Os10t0566700-00	Rice	plastid	76.87	73.57
HORVU1Hr1G054630.2	Barley	plastid	70.9	69.34
TraesCS1A01G214600.1	Wheat	plastid	70.9	68.84
TraesCS1D01G217600.1	Wheat	plastid	70.9	67.86
TraesCS1B01G228500.1	Wheat	plastid	70.15	67.63
GSMUA_Achr11P...	Banana	plastid	69.4	65.03
GSMUA_Achr2P18220_001	Banana	plastid	64.18	61.43
PGSC0003DMT400004324	Potato	plastid	60.45	60.0
Solyc01g088610.2.1	Tomato	plastid	59.7	59.26
CDY48244	Canola	cytosol, plastid	47.01	58.88
HORVU6Hr1G016500.1	Barley	plastid	47.76	58.72
AT3G60210.1	Thale cress	plastid	59.7	57.97
KRH48902	Soybean	plastid	55.22	55.22
AT2G44650.1	Thale cress	plastid	56.72	54.68
KRH66392	Soybean	plastid	54.48	54.48
CDY23449	Canola	plastid	55.97	53.96
CDY30480	Canola	plastid	54.48	52.52
Bra037640.1-P	Field mustard	plastid	54.48	52.52
Bra004853.1-P	Field mustard	plastid	54.48	52.52
VIT_15s0021g00830.t01	Wine grape	plastid	51.49	45.39
HORVU3Hr1G111860.1	Barley	plastid	33.58	41.67

Protein Annotations

MapMan:1.2.1.2.3	MapMan:19.1.7.3	Gene3D:2.30.33.40	UniProt:A0A1D6E0F1	InterPro:Chaperonin_GroES	InterPro:Chaperonin_GroES_sf
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	InterPro:GroES-like_sf	InterPro:IPR037124	ProteinID:ONM14216.1	ProteinID:ONM14217.1	ProteinID:ONM14218.1
PFAM:PF00166	PRINTS:PR00297	PANTHER:PTHR10772	PANTHER:PTHR10772:SF13	SMART:SM00883	SUPFAM:SSF50129
UniParc:UPI0002219F37	EnsemblPlantsGene:Zm00001d002408	EnsemblPlants:Zm00001d002408_P002	EnsemblPlants:Zm00001d002408_T002	:	:

Description

CHL-CPN10

Coordinates

chr2:-:12112299..12114644

Molecular Weight (calculated)

14444.5 Da

IEP (calculated)

6.526

GRAVY (calculated)

-0.016

Length

134 amino acids

Sequence
(BLAST)

001: MVPSLLAAMS TSPFLASSGS SRRPLGAAHT RRAGLRVAAL KYDPAKVAPQ NDRVLVRLEQ IPEKSAGGVL LPKSAVKFER YLMGEILSIG AEVSEVEAGK
101: KVLFSDINAY EVELGTDDEK HCFCRESDLL AVVE

Best Arabidopsis Sequence Match ( AT3G60210.1 )
(BLAST)

001: MASSFITVPK PFLSFPIKTN APTLPQQTLL GIRRNSFRIN AVSTKWEPAK VVPQADRVLV RLEVLPEKSS GGVLLPKSAV KFERYLTGEV VSVGSEVGEV
101: EPGKKVLFSD MSAYEVDFGT EDAKHCFCKE SDLLAIVQ

Arabidopsis Description

CPN10-110 kDa chaperonin 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1C2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.