Factsheet for Zm00001d043383_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000402_P001
Zm00001d002027_P002
Zm00001d002501_P001
Zm00001d003996_P001
Zm00001d008330_P001
Zm00001d011873_P001
Zm00001d012392_P001
Zm00001d016016_P001
Zm00001d016248_P001
Zm00001d018693_P001
Zm00001d023606_P005
Zm00001d025208_P002
Zm00001d036201_P001
Zm00001d040291_P001
Zm00001d041839_P001
Zm00001d042093_P001
Zm00001d043386_P001
Zm00001d045735_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52240.1	Zm00001d002027_P002	AT1G22920.1	21798944
AT1G52240.1	Zm00001d023606_P005	AT1G34430.1	21798944
AT1G52240.1	Zm00001d041839_P001	AT1G34430.1	21798944
AT1G52240.1	Zm00001d011873_P001	AT1G34570.1	21798944
AT1G52240.1	Zm00001d042093_P001	AT1G34570.1	21798944
AT1G52240.1	Zm00001d016248_P001	AT2G42790.1	21798944
AT1G52240.1	Zm00001d018693_P001	AT3G06430.1	21798944
AT1G52240.1	Zm00001d016016_P001	AT3G16120.1	21798944
AT1G52240.1	Zm00001d043386_P001	AT3G16120.1	21798944
AT1G52240.1	Zm00001d002501_P001	AT3G17668.1	21798944
AT1G52240.1	Zm00001d008330_P001	AT4G15930.1	21798944
AT1G52240.1	Zm00001d040291_P001	AT4G15930.1	21798944
AT1G52240.1	Zm00001d036201_P001	AT4G32960.1	21798944
AT1G52240.1	Zm00001d000402_P001	AT5G22310.1	21798944
AT1G52240.1	Zm00001d003996_P001	AT5G22310.1	21798944
AT1G52240.1	Zm00001d025208_P002	AT5G22310.1	21798944
AT1G52240.1	Zm00001d045735_P002	AT5G57660.1	21798944
AT1G52240.1	Zm00001d012392_P001	AT5G64960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU87589	Sorghum	nucleus	92.73	93.81
Zm00001d012691_P001	Maize	cytosol, extracellular, mitochondrion, plastid	45.12	82.23
TraesCS3D01G296400.1	Wheat	cytosol	71.13	80.52
HORVU3Hr1G073200.1	Barley	nucleus	72.47	79.62
Os01t0760300-01	Rice	plasma membrane	79.16	79.46
TraesCS3B01G331000.1	Wheat	nucleus	70.36	79.14
TraesCS3A01G305500.1	Wheat	cytosol, mitochondrion, nucleus, plastid	68.83	76.6
Zm00001d053307_P002	Maize	cytosol, plastid	52.77	57.14
Zm00001d016001_P002	Maize	mitochondrion	52.58	51.5
Bra021162.1-P	Field mustard	nucleus	42.45	51.15
Bra018956.1-P	Field mustard	nucleus	52.2	50.93
AT1G52240.1	Thale cress	nucleus	51.82	49.91
Zm00001d038989_P002	Maize	nucleus, plastid	48.57	49.8
CDY45633	Canola	nucleus	49.71	49.71
Bra030396.1-P	Field mustard	nucleus	49.9	48.6
Bra027189.1-P	Field mustard	nucleus	47.61	46.98
CDX87879	Canola	nucleus	49.71	46.68
Zm00001d009549_P002	Maize	mitochondrion	49.14	46.56
CDX97723	Canola	nucleus	47.23	46.43
AT3G16130.1	Thale cress	nucleus	47.61	46.28
CDY30136	Canola	nucleus	47.8	45.45
CDY52982	Canola	nucleus	52.2	45.42
CDY67259	Canola	nucleus	51.82	45.09
Zm00001d043889_P001	Maize	mitochondrion	51.24	44.3
CDY28381	Canola	nucleus	46.65	40.73
CDY20181	Canola	nucleus	46.65	40.2
Zm00001d002696_P001	Maize	cytosol	32.7	37.01
Zm00001d021489_P001	Maize	nucleus, plastid	31.55	35.56
Zm00001d029850_P001	Maize	nucleus, plastid	33.08	35.38
Zm00001d006269_P001	Maize	cytosol	25.43	34.64
Zm00001d021464_P002	Maize	nucleus, plastid	38.05	34.49
Zm00001d042861_P001	Maize	cytosol	37.09	33.86
Zm00001d010062_P001	Maize	peroxisome	36.71	33.28
Zm00001d051553_P004	Maize	cytosol	30.02	29.07
Zm00001d017755_P002	Maize	cytosol	29.64	28.65
Zm00001d047899_P001	Maize	cytosol	13.58	25.54
Zm00001d023356_P001	Maize	cytosol	16.25	23.94
Zm00001d037119_P001	Maize	plastid	17.59	21.35
Zm00001d049679_P001	Maize	plastid	17.59	20.81
Bra021161.1-P	Field mustard	nucleus	2.68	10.53

Protein Annotations

Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	EntrezGene:103651184	MapMan:27.4.3.1	UniProt:A0A1D6NB08	GO:GO:0003674
GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009
InterPro:IPR005512	ProteinID:ONM37724.1	PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101
PANTHER:PTHR33101:SF26	InterPro:RopGEF	UniParc:UPI000189D1CC	EnsemblPlantsGene:Zm00001d043383	EnsemblPlants:Zm00001d043383_P001	EnsemblPlants:Zm00001d043383_T001
SEG:seg	:	:	:	:	:

Description

Rop guanine nucleotide exchange factor 9

Coordinates

chr3:-:198347966..198350694

Molecular Weight (calculated)

58188.8 Da

IEP (calculated)

5.099

GRAVY (calculated)

-0.664

Length

523 amino acids

Sequence
(BLAST)

001: MNAGAQLERR SSVRRSQSMV QEEDRGQPPD EELMSRSQGS STEPSGGALR TGGAVPDKDS ATPKPRLAEQ SAGPSEMDLM KEKFAKLLLG EDMSGSGKGV
101: PSALALSNAV TNLAASVFGE QRKLEPMAPD RKGRWKREVG WLLSVADHIV EFVAKKQVLD NGTEMEVMGT QQRRDLQANI PALRKLDTML LDYLDNFKER
201: NEFWYVKRDS CSESENEERS DEKWWIPIVK VPPGGLSKTS RGWLLHQKEL VNQVLKAAMA INANCLMEMS IPDTYIDTLP KNGRASLGDA LYRIITDVEF
301: DPDDFLSTVD LTSEHKILDL KDRIEASVII WNRKVHNKDG KSSWGSAVSQ EKREQFEERA QTLLLIIKHR FPGIPQSTLD IAKIQENRDV GFALLESYSR
401: VLESLAFNVM SRIEDVIQAD NLAREKAKKN APPAADPAAG RRGPQEAGGD DDDQSKTTLL DFMGWTGDSE GKNDDASPPP PPELPAQDDG RLMKLPNIMT
501: NLKQTYMDKL DFLSGNRSPS GRH

Best Arabidopsis Sequence Match ( AT4G13240.1 )
(BLAST)

001: MVPSLERGIS ITSSFNLDRM FDSSPGKEQQ QPHLAETTMP ESQTQDSLGG SPVETSRPMT SRLISRRQDK QQSETEMMKD RFTKLLLGED MSGGGKGVSS
101: ALALSNAITN LAASIFGEQT KLQPMAPDRR ARWKKEIDWL LSVTDHIVEF VPSQQISKEG VCTEIMVTRQ RGDLLMNIPA LRKLDAMLID TLDNFRGHNE
201: FWYVSRDSEE GKQARNERTK DKWWLPPVKV PPNGLSESAR RMLHFQKDSV SQVQKAAMAI NAQVLSEMAI PDSYIESLPK NGRVSLGDSL YKSITEEWFD
301: PEQFLSTLDL STEHKVLDVK NRIEASIVIW KRKLHLKDNK SSWGSAVSLE KRELFEERAE TILVLLKQKF PGLPQSSLDI SKIQYNKDVG HAVLESYSRI
401: LESLGYTEMS RIDDVLYADS LARKQCTGEE TSDGGKIATE TDSASAGSSN YSGEEIEKLE SQNSSKTTLL DFIGWSDNSS KGQSEKPPKS PRMTPKKLSY
501: LEKLENLNGF RSPKDRH

Arabidopsis Description

ROPGEF9Rop guanine nucleotide exchange factor 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVQ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.