Factsheet for Zm00001d002696_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018004_P002
Zm00001d044802_P001
Zm00001d052273_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45890.1	Zm00001d018004_P002	AT5G62880.1	22500990
AT2G45890.1	Zm00001d044802_P001	AT5G62880.1	22500990
AT2G45890.1	Zm00001d052273_P004	AT5G62880.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11256	Sorghum	nucleus	94.81	92.99
TraesCS2B01G426300.1	Wheat	cytosol	81.17	80.65
TraesCS2A01G408100.1	Wheat	cytosol	81.17	80.13
TraesCS2D01G405400.1	Wheat	nucleus	81.39	80.0
Os04t0559100-00	Rice	cytosol	29.87	75.82
HORVU2Hr1G096430.13	Barley	mitochondrion	80.52	70.06
GSMUA_Achr5P20570_001	Banana	nucleus	58.23	55.81
Zm00001d029850_P001	Maize	nucleus, plastid	58.44	55.21
KRH15734	Soybean	cytosol	30.09	53.46
PGSC0003DMT400000136	Potato	nucleus	54.76	53.04
Solyc01g094610.2.1	Tomato	nucleus	54.76	53.04
Zm00001d021489_P001	Maize	nucleus, plastid	53.03	52.8
CDY70620	Canola	nucleus	52.81	52.03
AT4G00460.2	Thale cress	nucleus	53.25	52.01
Bra000971.1-P	Field mustard	nucleus	53.25	51.46
KRH65102	Soybean	nucleus	53.46	51.35
VIT_15s0046g02530.t01	Wine grape	plastid	55.84	51.19
CDY51157	Canola	nucleus	50.22	50.99
CDY07216	Canola	cytosol	52.38	50.95
Bra037342.1-P	Field mustard	cytosol	52.16	50.52
KRH48179	Soybean	nucleus	40.48	49.87
CDY57376	Canola	cytosol, extracellular, nucleus	8.01	49.33
CDX74772	Canola	nucleus, plastid	47.84	49.11
CDY18892	Canola	nucleus	47.62	48.67
KRH00737	Soybean	nucleus, plastid	53.9	48.63
KRH40457	Soybean	cytosol	53.68	48.44
Bra004945.1-P	Field mustard	nucleus, plastid	47.84	48.04
AT1G01700.4	Thale cress	nucleus	53.46	47.96
AT2G45890.1	Thale cress	nucleus, plastid	47.62	47.52
KRG94270	Soybean	mitochondrion	10.61	44.14
Zm00001d042861_P001	Maize	cytosol	49.35	39.79
Zm00001d010062_P001	Maize	peroxisome	49.57	39.69
Zm00001d021464_P002	Maize	nucleus, plastid	48.27	38.65
Zm00001d006269_P001	Maize	cytosol	31.82	38.28
CDX91908	Canola	cytosol	53.46	37.71
Zm00001d012691_P001	Maize	cytosol, extracellular, mitochondrion, plastid	22.94	36.93
Zm00001d053307_P002	Maize	cytosol, plastid	37.45	35.82
Zm00001d038989_P002	Maize	nucleus, plastid	36.58	33.14
Zm00001d043383_P001	Maize	nucleus	37.01	32.7
Zm00001d016001_P002	Maize	mitochondrion	37.66	32.58
Zm00001d009549_P002	Maize	mitochondrion	36.36	30.43
Zm00001d043889_P001	Maize	mitochondrion	38.74	29.59
Zm00001d047899_P001	Maize	cytosol	17.53	29.14
Zm00001d017755_P002	Maize	cytosol	33.33	28.47
Zm00001d051553_P004	Maize	cytosol	33.12	28.33
Zm00001d023356_P001	Maize	cytosol	21.21	27.61
Zm00001d037119_P001	Maize	plastid	24.03	25.75
Zm00001d049679_P001	Maize	plastid	23.81	24.89

Protein Annotations

Gene3D:1.20.58.2010	EntrezGene:100382507	MapMan:27.4.3.1	EMBL:BT063211	UniProt:C0P4J2	GO:GO:0003674
GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009
InterPro:IPR005512	ProteinID:ONM15120.1	PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101
PANTHER:PTHR33101:SF7	InterPro:RopGEF	UniParc:UPI0001948EE9	EnsemblPlantsGene:Zm00001d002696	EnsemblPlants:Zm00001d002696_P001	EnsemblPlants:Zm00001d002696_T001
SEG:seg	:	:	:	:	:

Description

Rop guanine nucleotide exchange factor 2

Coordinates

chr2:-:19454076..19456451

Molecular Weight (calculated)

51469.3 Da

IEP (calculated)

6.203

GRAVY (calculated)

-0.417

Length

462 amino acids

Sequence
(BLAST)

001: METPSSTCDE GSELDARSQS DYADFDDLDL PPRGRHRRDP SSDASSECSG EPGSPYASSP YPRWPVCTLP ARVPPPAAPL LKRLGTTRRG ARVGACDGKA
101: GDGELQLIKE RFSKLLLGED MSGSGKGVST SVAISNAITN LYATVFGSCH RLKPLPPEKK SMWRREMDCL LSVCDYIVEF FPSKEILPDG SIREVMATRP
201: RSDIYVNLPA LEKLDDMLLE ILYSFQKTEF WYVNDKGQKD DSVATPCRPV SHRGEEKWWL PVPCVAKPGL TETARRDLQQ KRDCASQIHK AAMAINNAVL
301: AEIRIPDLYK EALPKCGRAS VGDLIYRHMS FPGKFSPEYL LDCLEISSEH EALEAADRVE AAMHVWRRKA SQRSPWSAVK DLMESDKNVM LARRAEDVLL
401: CLKQRFPGLS QTTLDASKIQ YNKDVGQAIL ESYSRVLESL AYNIVTCVDD VLFADEAARK IA

Best Arabidopsis Sequence Match ( AT4G00460.2 )
(BLAST)

001: MENLSNPDEN DDHQSPRSID QNDQSAVETP VYSTMSIDSF VYPRTCSETT SGFSDQIDET NSFCSEASPC NWPVLTESKS SKCLSGLEMQ SNECLVVQEI
101: SEPELETMKE RFAKLLLGED MSGSGKGVCT AVTISNAITN LYATVFGQNL RLEPLETEKR ALWKREMNCL LSVCDYIVEF IPRCQNLSNG ATVEVMESRP
201: RADIYINLPA LRKLDSMLME ALDSFQNTEF WYAEEGSLSM KSARSSTGSF RKVIVQRKEE KWWLPVPLVP SEGLSDKARK QLKNKRESTN QIHKAAMAIN
301: SSILSEMEIP DSYMTTLPKC GKSSVGDSIY RYMSGSGRFF PEQLLDCLNI SSEHEAVQLA DRVEASMYTW RRKSCLSNSK NSWNMVKDLM STTERTDKNY
401: VMAERAETLL FCLKQRYPEL SQTSLDICKI QYNKDVGKAV LESYSRVLEG LAFNIVAWID DVLYVDKTMR GSE

Arabidopsis Description

ROPGEF3Rop guanine nucleotide exchange factor 3 [Source:UniProtKB/Swiss-Prot;Acc:A4IJ27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.