Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000971.1-P | Field mustard | nucleus | 94.93 | 93.93 |
| CDY70620 | Canola | nucleus | 93.02 | 93.82 |
| CDY07216 | Canola | cytosol | 91.33 | 90.95 |
| Bra037342.1-P | Field mustard | cytosol | 91.54 | 90.78 |
| CDY51157 | Canola | nucleus | 87.1 | 90.55 |
| AT1G01700.4 | Thale cress | nucleus | 84.36 | 77.48 |
| CDX91908 | Canola | cytosol | 93.66 | 67.63 |
| KRH65102 | Soybean | nucleus | 66.38 | 65.28 |
| Solyc01g094610.2.1 | Tomato | nucleus | 65.12 | 64.57 |
| PGSC0003DMT400000136 | Potato | nucleus | 64.69 | 64.15 |
| KRH48179 | Soybean | nucleus | 48.41 | 61.07 |
| KRH15734 | Soybean | cytosol | 33.4 | 60.77 |
| VIT_15s0046g02530.t01 | Wine grape | plastid | 63.64 | 59.72 |
| AT2G45890.1 | Thale cress | nucleus, plastid | 58.35 | 59.61 |
| KRH00737 | Soybean | nucleus, plastid | 63.42 | 58.59 |
| KRH40457 | Soybean | cytosol | 62.37 | 57.62 |
| GSMUA_Achr5P20570_001 | Banana | nucleus | 55.39 | 54.36 |
| KRG94270 | Soybean | mitochondrion | 12.69 | 54.05 |
| EES11256 | Sorghum | nucleus | 53.07 | 53.29 |
| Zm00001d002696_P001 | Maize | cytosol | 52.01 | 53.25 |
| Os10t0550300-00 | Rice | plastid | 53.91 | 53.24 |
| TraesCS1A01G208700.1 | Wheat | nucleus | 52.43 | 51.99 |
| TraesCS1D01G211900.1 | Wheat | nucleus | 52.43 | 51.99 |
| TraesCS1B01G222700.1 | Wheat | plastid | 52.43 | 51.88 |
| TraesCS2B01G426300.1 | Wheat | cytosol | 50.74 | 51.61 |
| HORVU1Hr1G053350.4 | Barley | nucleus, plastid | 52.01 | 51.46 |
| TraesCS2A01G408100.1 | Wheat | cytosol | 50.53 | 51.07 |
| TraesCS2D01G405400.1 | Wheat | nucleus | 50.53 | 50.85 |
| Os07t0481100-01 | Rice | cytosol | 49.26 | 50.65 |
| EER91970 | Sorghum | plastid | 52.22 | 50.51 |
| Zm00001d021489_P001 | Maize | nucleus, plastid | 49.47 | 50.43 |
| Zm00001d029850_P001 | Maize | nucleus, plastid | 51.8 | 50.1 |
| EER99384 | Sorghum | nucleus, plastid | 48.63 | 49.68 |
| TraesCS6A01G405000.1 | Wheat | nucleus | 47.78 | 49.45 |
| Os04t0559100-00 | Rice | cytosol | 19.03 | 49.45 |
| HORVU6Hr1G092860.2 | Barley | nucleus | 47.36 | 49.02 |
| TraesCS6D01G388300.1 | Wheat | nucleus | 47.99 | 48.61 |
| TraesCS6B01G449200.1 | Wheat | nucleus | 47.57 | 47.77 |
| HORVU2Hr1G096430.13 | Barley | mitochondrion | 50.32 | 44.82 |
| AT5G02010.1 | Thale cress | nucleus | 49.26 | 42.67 |
| AT4G38430.1 | Thale cress | nucleus | 46.72 | 40.33 |
| AT5G05940.1 | Thale cress | cytosol | 48.84 | 37.81 |
| AT3G55660.1 | Thale cress | cytosol, plastid | 45.45 | 37.13 |
| AT4G13240.1 | Thale cress | nucleus | 39.32 | 35.98 |
| AT1G79860.1 | Thale cress | nucleus | 38.9 | 35.73 |
| AT3G24620.1 | Thale cress | nucleus | 39.11 | 35.37 |
| AT1G52240.1 | Thale cress | nucleus | 38.69 | 33.7 |
| AT5G19560.4 | Thale cress | mitochondrion | 34.88 | 32.23 |
| AT3G16130.1 | Thale cress | nucleus | 35.94 | 31.6 |
| AT1G31650.1 | Thale cress | mitochondrion, nucleus | 34.67 | 28.47 |
Protein Annotations
| Gene3D:1.20.58.2010 | MapMan:27.4.3.1 | EntrezGene:827967 | UniProt:A4IJ27 | ProteinID:AAB62823.1 | ProteinID:AAC13624.2 |
| ProteinID:AAF02781.1 | ProteinID:AEE81885.1 | ProteinID:ANM66275.1 | ArrayExpress:AT4G00460 | EnsemblPlantsGene:AT4G00460 | RefSeq:AT4G00460 |
| TAIR:AT4G00460 | RefSeq:AT4G00460-TAIR-G | EnsemblPlants:AT4G00460.2 | TAIR:AT4G00460.2 | Symbol:ATROPGEF3 | EMBL:BT030385 |
| ProteinID:CAB80855.1 | ProteinID:CAB80856.1 | GO:GO:0003674 | GO:GO:0005085 | GO:GO:0005089 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0008150 | GO:GO:0065009 | InterPro:IPR005512 | RefSeq:NP_001118903.1 | RefSeq:NP_001328183.1 |
| PFAM:PF03759 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 |
| PO:PO:0020100 | PO:PO:0025022 | InterPro:PRONE_dom | PFscan:PS51334 | PANTHER:PTHR33101 | PANTHER:PTHR33101:SF9 |
| InterPro:RopGEF | UniParc:UPI000016295B | : | : | : | : |
Description
ROPGEF3Rop guanine nucleotide exchange factor 3 [Source:UniProtKB/Swiss-Prot;Acc:A4IJ27]
Coordinates
chr4:-:211000..213697
Molecular Weight (calculated)
53535.4 Da
IEP (calculated)
4.703
GRAVY (calculated)
-0.448
Length
473 amino acids
Sequence
(BLAST)
(BLAST)
001: MENLSNPDEN DDHQSPRSID QNDQSAVETP VYSTMSIDSF VYPRTCSETT SGFSDQIDET NSFCSEASPC NWPVLTESKS SKCLSGLEMQ SNECLVVQEI
101: SEPELETMKE RFAKLLLGED MSGSGKGVCT AVTISNAITN LYATVFGQNL RLEPLETEKR ALWKREMNCL LSVCDYIVEF IPRCQNLSNG ATVEVMESRP
201: RADIYINLPA LRKLDSMLME ALDSFQNTEF WYAEEGSLSM KSARSSTGSF RKVIVQRKEE KWWLPVPLVP SEGLSDKARK QLKNKRESTN QIHKAAMAIN
301: SSILSEMEIP DSYMTTLPKC GKSSVGDSIY RYMSGSGRFF PEQLLDCLNI SSEHEAVQLA DRVEASMYTW RRKSCLSNSK NSWNMVKDLM STTERTDKNY
401: VMAERAETLL FCLKQRYPEL SQTSLDICKI QYNKDVGKAV LESYSRVLEG LAFNIVAWID DVLYVDKTMR GSE
101: SEPELETMKE RFAKLLLGED MSGSGKGVCT AVTISNAITN LYATVFGQNL RLEPLETEKR ALWKREMNCL LSVCDYIVEF IPRCQNLSNG ATVEVMESRP
201: RADIYINLPA LRKLDSMLME ALDSFQNTEF WYAEEGSLSM KSARSSTGSF RKVIVQRKEE KWWLPVPLVP SEGLSDKARK QLKNKRESTN QIHKAAMAIN
301: SSILSEMEIP DSYMTTLPKC GKSSVGDSIY RYMSGSGRFF PEQLLDCLNI SSEHEAVQLA DRVEASMYTW RRKSCLSNSK NSWNMVKDLM STTERTDKNY
401: VMAERAETLL FCLKQRYPEL SQTSLDICKI QYNKDVGKAV LESYSRVLEG LAFNIVAWID DVLYVDKTMR GSE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.