Factsheet for Zm00001d029850_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018004_P002
Zm00001d044802_P001
Zm00001d052273_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45890.1	Zm00001d018004_P002	AT5G62880.1	22500990
AT2G45890.1	Zm00001d044802_P001	AT5G62880.1	22500990
AT2G45890.1	Zm00001d052273_P004	AT5G62880.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91970	Sorghum	plastid	93.25	93.25
Os10t0550300-00	Rice	plastid	78.73	80.38
TraesCS1A01G208700.1	Wheat	nucleus	76.69	78.62
TraesCS1D01G211900.1	Wheat	nucleus	76.48	78.41
HORVU1Hr1G053350.4	Barley	nucleus, plastid	76.07	77.82
TraesCS1B01G222700.1	Wheat	plastid	75.87	77.62
GSMUA_Achr5P20570_001	Banana	nucleus	57.87	58.71
Zm00001d002696_P001	Maize	cytosol	55.21	58.44
KRH15734	Soybean	cytosol	30.67	57.69
Zm00001d021489_P001	Maize	nucleus, plastid	51.94	54.74
CDY57376	Canola	cytosol, extracellular, nucleus	8.38	54.67
Solyc01g094610.2.1	Tomato	nucleus	52.97	54.3
PGSC0003DMT400000136	Potato	nucleus	52.97	54.3
KRH65102	Soybean	nucleus	52.97	53.85
KRG94270	Soybean	mitochondrion	12.07	53.15
VIT_15s0046g02530.t01	Wine grape	plastid	53.78	52.18
CDY07216	Canola	cytosol	50.51	52.0
CDY70620	Canola	nucleus	49.69	51.81
AT4G00460.2	Thale cress	nucleus	50.1	51.8
Bra000971.1-P	Field mustard	nucleus	50.51	51.67
KRH48179	Soybean	nucleus	39.47	51.47
CDY51157	Canola	nucleus	47.85	51.43
KRH00737	Soybean	nucleus, plastid	53.78	51.37
Bra037342.1-P	Field mustard	cytosol	50.1	51.36
CDX74772	Canola	nucleus, plastid	47.03	51.11
KRH40457	Soybean	cytosol	53.17	50.78
Bra004945.1-P	Field mustard	nucleus, plastid	47.65	50.65
CDY18892	Canola	nucleus	46.63	50.44
AT2G45890.1	Thale cress	nucleus, plastid	47.24	49.89
AT1G01700.4	Thale cress	nucleus	50.31	47.77
Zm00001d042861_P001	Maize	cytosol	47.03	40.14
Zm00001d010062_P001	Maize	peroxisome	46.83	39.69
Zm00001d006269_P001	Maize	cytosol	30.27	38.54
Zm00001d021464_P002	Maize	nucleus, plastid	44.99	38.13
Zm00001d012691_P001	Maize	cytosol, extracellular, mitochondrion, plastid	22.09	37.63
CDX91908	Canola	cytosol	50.31	37.56
Zm00001d053307_P002	Maize	cytosol, plastid	36.2	36.65
Zm00001d038989_P002	Maize	nucleus, plastid	37.63	36.08
Zm00001d043383_P001	Maize	nucleus	35.38	33.08
Zm00001d016001_P002	Maize	mitochondrion	35.38	32.4
Zm00001d009549_P002	Maize	mitochondrion	36.2	32.07
Zm00001d047899_P001	Maize	cytosol	16.97	29.86
Zm00001d017755_P002	Maize	cytosol	32.72	29.57
Zm00001d051553_P004	Maize	cytosol	32.31	29.26
Zm00001d043889_P001	Maize	mitochondrion	36.2	29.26
Zm00001d037119_P001	Maize	plastid	23.11	26.22
Zm00001d023356_P001	Maize	cytosol	18.4	25.35
Zm00001d049679_P001	Maize	plastid	22.9	25.34

Protein Annotations

Gene3D:1.20.58.2010	EntrezGene:100191669	MapMan:27.4.3.1	UniProt:B4F9P8	EMBL:BT033836	EMBL:EU955702
GO:GO:0003674	GO:GO:0003824	GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740
GO:GO:0065009	InterPro:IPR005512	ProteinID:ONL99725.1	PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334
PANTHER:PTHR33101	PANTHER:PTHR33101:SF9	InterPro:RopGEF	UniParc:UPI00017B6240	EnsemblPlantsGene:Zm00001d029850	EnsemblPlants:Zm00001d029850_P001
EnsemblPlants:Zm00001d029850_T001	SEG:seg	:	:	:	:

Description

Rop guanine nucleotide exchange factor 2

Coordinates

chr1:-:89958471..89961843

Molecular Weight (calculated)

53197.9 Da

IEP (calculated)

6.410

GRAVY (calculated)

-0.276

Length

489 amino acids

Sequence
(BLAST)

001: MDRDSSSSVS ASDGSSEAGE RGGCCSSPPS TRSLVDTAGN NLISRTASDA STSLSDRCSS VDVDHSGPFQ PAAAVAKLIG RSSPPSAAAS LRRLSIKPRA
101: DVLDRRSTED EMELVKERFS KLLLGEDMSG GGKGVCTAVA ISNAITNLYA TVFGSCHKLE PLPAGKKAMW TREMDCLLSV CDYIVQFYPS TQTLPDGTKV
201: EVMATRPRSD IYINLPALEK LDAMLIDILD SFQKAEFWYA DAGTRSFGSV TSSSSSRMSC SSSFRRSAHR NDDKWWLPVP CVPDAGLTDK ARKDLQQRRD
301: CANQIHKAAV SINSGVLGDM EVPESFMAVL PKSGRASVGD SVYRVMLGAD KFSPEFLLDT LDISSEHDAL AMADRVEAAM YVWRRKASGS HGKLPWSKVK
401: ELAADDDDKN VTLANRAESL LLCIKHRFPG LSQTTLDTSK IQFNKDVGQA ILESYSRVLE SLAFNIVSWI DDVLFVDRSI RKLSDNLKS

Best Arabidopsis Sequence Match ( AT4G00460.2 )
(BLAST)

001: MENLSNPDEN DDHQSPRSID QNDQSAVETP VYSTMSIDSF VYPRTCSETT SGFSDQIDET NSFCSEASPC NWPVLTESKS SKCLSGLEMQ SNECLVVQEI
101: SEPELETMKE RFAKLLLGED MSGSGKGVCT AVTISNAITN LYATVFGQNL RLEPLETEKR ALWKREMNCL LSVCDYIVEF IPRCQNLSNG ATVEVMESRP
201: RADIYINLPA LRKLDSMLME ALDSFQNTEF WYAEEGSLSM KSARSSTGSF RKVIVQRKEE KWWLPVPLVP SEGLSDKARK QLKNKRESTN QIHKAAMAIN
301: SSILSEMEIP DSYMTTLPKC GKSSVGDSIY RYMSGSGRFF PEQLLDCLNI SSEHEAVQLA DRVEASMYTW RRKSCLSNSK NSWNMVKDLM STTERTDKNY
401: VMAERAETLL FCLKQRYPEL SQTSLDICKI QYNKDVGKAV LESYSRVLEG LAFNIVAWID DVLYVDKTMR GSE

Arabidopsis Description

ROPGEF3Rop guanine nucleotide exchange factor 3 [Source:UniProtKB/Swiss-Prot;Acc:A4IJ27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.