Factsheet for Bra004945.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010128.1-P
Bra029240.1-P
Bra035878.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45890.1	Bra010128.1-P	AT5G62880.1	22500990
AT2G45890.1	Bra029240.1-P	AT5G62880.1	22500990
AT2G45890.1	Bra035878.1-P	AT5G62880.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74772	Canola	nucleus, plastid	97.39	99.56
CDY18892	Canola	nucleus	93.7	95.35
AT2G45890.1	Thale cress	nucleus, plastid	92.39	91.79
Bra037342.1-P	Field mustard	cytosol	59.13	57.02
Bra000971.1-P	Field mustard	nucleus	58.48	56.28
GSMUA_Achr5P20570_001	Banana	nucleus	54.78	52.28
VIT_15s0046g02530.t01	Wine grape	plastid	56.52	51.59
Os10t0550300-00	Rice	plastid	51.52	49.48
EER91970	Sorghum	plastid	51.09	48.06
Zm00001d002696_P001	Maize	cytosol	48.04	47.84
Os04t0559100-00	Rice	cytosol	18.91	47.8
EES11256	Sorghum	nucleus	48.91	47.77
TraesCS2B01G426300.1	Wheat	cytosol	48.26	47.74
Zm00001d029850_P001	Maize	nucleus, plastid	50.65	47.65
TraesCS1B01G222700.1	Wheat	plastid	48.91	47.07
TraesCS2D01G405400.1	Wheat	nucleus	48.04	47.02
TraesCS2A01G408100.1	Wheat	cytosol	47.83	47.01
TraesCS1D01G211900.1	Wheat	nucleus	48.7	46.96
TraesCS1A01G208700.1	Wheat	nucleus	48.48	46.75
Os07t0481100-01	Rice	cytosol	46.52	46.52
TraesCS6A01G405000.1	Wheat	nucleus	46.09	46.39
HORVU1Hr1G053350.4	Barley	nucleus, plastid	48.04	46.23
HORVU6Hr1G092860.2	Barley	nucleus	45.65	45.95
TraesCS6D01G388300.1	Wheat	nucleus	46.09	45.4
EER99384	Sorghum	nucleus, plastid	45.65	45.36
Zm00001d021489_P001	Maize	nucleus, plastid	45.65	45.26
TraesCS6B01G449200.1	Wheat	nucleus	45.43	44.37
HORVU2Hr1G096430.13	Barley	mitochondrion	47.17	40.87
Bra015010.1-P	Field mustard	cytosol	46.3	38.94
Bra009621.1-P	Field mustard	nucleus	45.87	37.68
Bra015068.1-P	Field mustard	nucleus	40.0	35.32
Bra036671.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	38.7	35.25
Bra009152.1-P	Field mustard	cytosol, plastid	45.22	34.96
Bra013249.1-P	Field mustard	nucleus, plastid	39.13	34.75
Bra003536.1-P	Field mustard	nucleus	38.7	34.7
Bra021162.1-P	Field mustard	nucleus	32.61	34.56
Bra020048.1-P	Field mustard	nucleus	36.3	33.81
Bra007183.1-P	Field mustard	cytosol, plastid	41.96	33.8
Bra006510.1-P	Field mustard	cytosol	35.65	33.61
Bra030396.1-P	Field mustard	nucleus	38.91	33.33
Bra002246.1-P	Field mustard	plastid	35.87	31.91
Bra018956.1-P	Field mustard	nucleus	37.17	31.9
Bra027189.1-P	Field mustard	nucleus	36.74	31.89
Bra005323.1-P	Field mustard	nucleus	30.87	28.34
Bra005322.1-P	Field mustard	nucleus	19.57	22.96
Bra021161.1-P	Field mustard	nucleus	1.09	3.76

Protein Annotations

Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	MapMan:27.4.3.1	EnsemblPlantsGene:Bra004945	EnsemblPlants:Bra004945.1	EnsemblPlants:Bra004945.1-P
GO:GO:0003674	GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005618	GO:GO:0005623	GO:GO:0005886	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150
GO:GO:0009531	GO:GO:0009605	GO:GO:0009607	GO:GO:0009653	GO:GO:0009664	GO:GO:0009817
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016049	GO:GO:0030154	GO:GO:0030312
GO:GO:0040007	GO:GO:0048767	GO:GO:0065009	InterPro:IPR005512	UniProt:M4CL59	PFAM:PF03759
InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF9	InterPro:RopGEF	UniParc:UPI00025480D3
SEG:seg	:	:	:	:	:

Description

AT2G45890 (E=9e-213) ATROPGEF4, ROPGEF4 | ROPGEF4 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 4); Rho guanyl-nucleotide exchange factor

Coordinates

chrA05:+:2591812..2594623

Molecular Weight (calculated)

51726.6 Da

IEP (calculated)

4.716

GRAVY (calculated)

-0.556

Length

460 amino acids

Sequence
(BLAST)

001: MESSPSSDQN DVSASETPTS SVSSPYRRTY SDISGLSHRF DVQSFYNRSS NTNAVVHEED LSEDAVEPKD NVDGDGEDHD RDSDIDSAED AELEMMRERF
101: AKLLLGEDMS GSGKGVCTAV TVSNSITNLY ATVFGQSLRL QPLSTEKKDL WKREMNCFMS ICDYIVEVIP RSLGNNVEIT ETKLRSDILM NLPALRKLDN
201: MLMDILDGFT ENEFWYVERG SSSMNSNNGG RDSGSFRKVV VQRKDEKWWL PVPCVPAEGL SENERKNLRH KRDCANQIHK AALAINDSTL NDMDIPDSYL
301: TTLPKSGKAS VGDVIYKQLC TAEKFYPDQL LDILKISSEH EALELADKVE ASLVTWRRKT GGLAHSKSSW DMMKDMGGDA GNDKNHILAA RARSLLFCLK
401: QRFPELSQTS LDICKIQYNR DVGKAVLESY SRVLEGLAYN VVSWIDDVLY VDRTVRNRDD

Best Arabidopsis Sequence Match ( AT2G45890.1 )
(BLAST)

001: MESSSNSDQN EGTPTSSVSS PYRRTYSDIS GLSHRFDVQS FYNRPSNTNA VVLSGHEEDV SEDAEEPKDD VVNDVHGDGD EEDSDIDSAE DAELEMMRER
101: FAKLLLGEDM SGSGKGVCTA VTVSNSITNL YATVFGQSLR LQPLSTEKKD LWKREMNCFM SICDYIVEVI PRSLGTNVEI TETKLRSDIL MSLPALRKLD
201: NMLMEILDSF TENEFWYVER GSSSMNSGGG GRDSGTFRKV VVQRKDEKWW LPVPCVPAEG LSEEERKHLR HKRDCASQIH KAALAINDST LNDMDIPDSY
301: LTTLPKSGKA SVGDVIYKQL CTAEKFYPDQ LLDILKITSE HEALELADKV EASLVTWRRK TGGLTHSKSS WDMMKDISGD ADRGNDKNHI LAARARSLLF
401: CLKQRYPELS QTSLDICKIQ FNRDVGKAVL ESYSRVLEGL AYNVVSWIDD VLYVDRTVRN RDD

Arabidopsis Description

ROPGEF4Rop guanine nucleotide exchange factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q0WNP7]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.