Factsheet for Bra007183.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40246	Canola	cytosol, plastid	97.55	100.0
AT3G55660.1	Thale cress	cytosol, plastid	89.32	88.08
GSMUA_Achr9P03750_001	Banana	cytosol	45.53	55.79
PGSC0003DMT400067654	Potato	nucleus	50.26	53.95
Solyc08g006550.2.1	Tomato	nucleus	49.74	53.58
VIT_13s0019g02710.t01	Wine grape	nucleus	52.54	50.34
KRH73109	Soybean	nucleus	49.04	50.27
EES03886	Sorghum	cytosol	47.46	49.72
Os01t0849100-01	Rice	cytosol	47.29	49.45
KRG97804	Soybean	nucleus	51.14	49.24
KRH31060	Soybean	nucleus	51.31	49.0
TraesCS3B01G396500.1	Wheat	cytosol	46.23	48.98
TraesCS3D01G357800.1	Wheat	cytosol	45.88	48.7
TraesCS3A01G364400.1	Wheat	nucleus	46.06	48.61
Bra009621.1-P	Field mustard	nucleus	47.29	48.21
KRH15022	Soybean	nucleus	47.11	47.95
Bra009152.1-P	Field mustard	cytosol, plastid	49.56	47.56
TraesCS1D01G280000.1	Wheat	cytosol	45.88	46.87
Zm00001d042861_P001	Maize	cytosol	46.94	46.77
Os05t0454200-01	Rice	nucleus	46.06	46.3
TraesCS1B01G289900.1	Wheat	cytosol	45.88	46.29
HORVU1Hr1G072910.3	Barley	cytosol	45.36	45.92
EES18335	Sorghum	cytosol	46.23	45.05
Zm00001d010062_P001	Maize	peroxisome	45.36	44.89
Bra037342.1-P	Field mustard	cytosol	36.78	44.03
TraesCS1A01G280900.2	Wheat	cytosol	45.36	43.97
Bra000971.1-P	Field mustard	nucleus	36.78	43.93
Bra015010.1-P	Field mustard	cytosol	40.46	42.23
Bra004945.1-P	Field mustard	nucleus, plastid	33.8	41.96
HORVU3Hr1G085680.2	Barley	plastid	46.23	40.43
Bra036671.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	34.68	39.21
Bra021162.1-P	Field mustard	nucleus	29.42	38.71
Bra020048.1-P	Field mustard	nucleus	32.92	38.06
Bra015068.1-P	Field mustard	nucleus	34.15	37.43
Bra013249.1-P	Field mustard	nucleus, plastid	33.63	37.07
Bra003536.1-P	Field mustard	nucleus	33.1	36.84
Bra006510.1-P	Field mustard	cytosol	31.0	36.27
Bra030396.1-P	Field mustard	nucleus	33.8	35.94
Bra018956.1-P	Field mustard	nucleus	33.1	35.26
Bra002246.1-P	Field mustard	plastid	31.7	35.01
Bra027189.1-P	Field mustard	nucleus	32.22	34.72
Zm00001d047899_P001	Maize	cytosol	16.11	33.09
Bra005323.1-P	Field mustard	nucleus	28.02	31.94
Zm00001d023356_P001	Maize	cytosol	18.91	30.42
Zm00001d037119_P001	Maize	plastid	21.89	29.0
Zm00001d049679_P001	Maize	plastid	21.54	27.83
Bra005322.1-P	Field mustard	nucleus	19.09	27.81
GSMUA_Achr6P14950_001	Banana	mitochondrion	44.66	19.2
Bra021161.1-P	Field mustard	nucleus	1.58	6.77

Protein Annotations

EnsemblPlants:Bra007183.1	EnsemblPlants:Bra007183.1-P	EnsemblPlantsGene:Bra007183	Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	GO:GO:0003674
GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009
InterPro:IPR005512	InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101	PANTHER:PTHR33101:SF1	PFAM:PF03759
PFscan:PS51334	SEG:seg	UniParc:UPI0002542A9F	UniProt:M4CSJ1	MapMan:27.4.3.1	:

Description

AT3G55660 (E=4e-271) ATROPGEF6, ROPGEF6 | ROPGEF6; Rho guanyl-nucleotide exchange factor

Coordinates

chrA09:-:27809243..27812082

Molecular Weight (calculated)

63307.3 Da

IEP (calculated)

8.856

GRAVY (calculated)

-0.426

Length

571 amino acids

Sequence
(BLAST)

001: MESSCIGSEG SKRYGESKRI VADSVTESTT DSSLSSSSCG AGSSSGRSVS SLSSPPTKSQ LLGWPLGQSS WRKSSGKKMT KKTPTKVDTF GFKRIGTETS
101: EVELLKERMA KLLLGEDMSG SGEGVCPALA ISNAITNLYA AILGQQWRLE PLPSEKKTMW RREIEVLLSV SDHIVELVPS FQNIPNGSKI EVMNCRPRSD
201: LSTCLPALRK LDNMLIEILD SFEGTEFWYV DQGVVASESA RSNSFREDGD KWWLPLPRVP SDGLSEQTRK KLDHTRDFTN QILKACMSIN SIALADMEVP
301: QAYLEALPKN GRSCLGDFLY RNITSDNFSA DYLLESIDLS SEHAVVEMAN RVEASMYIWR RRGHSRHLIS LYRSTGAKPT WGMIVREMMM NQNDGDKRQI
401: FAGRAESLLI SLKQRFPGLR QTALDTSKIQ FNKDVGKSIL ESYSRVLESL AYSIGVRIEE VLYMDDISKE DHDDSCSDKL RLLSKEDASS RSAGSLRKRL
501: SAPSLFSVSF SGTSTPYRTP SFSASTPTYS PMPLISPISG GGERAPFLSR RNIRERCGFG PKKALANYLR G

Best Arabidopsis Sequence Match ( AT3G55660.1 )
(BLAST)

001: MEDNSCIGFE GSKRFGETSK RIIGLIDSVT ESTTDSSLSS SSSGVGSSSG RSSVAERSVS SPPTKSQILG WPLGQGSWRK SSGKMKKKTP TKIDDFGFKR
101: VGTETSEIEL LKERMAKLLL GEDMSGSGEG VCPALAISNA ITNLYAAILG QQWRLEPIPS EKKLMWRREI EVLLSVSDHI VELVPSFQNF PNGNKIEVMN
201: CRPRSDLFTC LPALRKLDNM LIEILDSFGE TEFWYVDQGI VAAESARSNS FREDGDKWWL PLPRVPSDGL TEQTRKKLDH TREFTNQILK ACMSINSIAL
301: AEMEVPQSYL EALPKNGRSC LGDFLYRNIT SDNFSADHLL ESIDLSSELA VVEMANRVEA SMYVWRRRAH SRHLISLYRS TSTRWGMIVK EMMMHQTDGD
401: KREIFAERAE SLLIRLKQRF PGLRQTALDT SKIQYNKDVG KSILESYSRV LESLAYSIGV RIEEVLFMDD ISKDDGDGDD DSCSDKLRLL SKEAASGGSG
501: SLREKLSAPS LFSVSFSGTS TPYRTLSFSA STPSYSPMPL ISPINGGRGG ERAPFLSGRN IRERCGFGPK KALANYLRG

Arabidopsis Description

ROPGEF6Rop guanine nucleotide exchange factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M056]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.