CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042861_P001	Maize	cytosol	95.6	90.92
Os01t0849100-01	Rice	cytosol	84.95	84.8
TraesCS3B01G396500.1	Wheat	cytosol	80.73	81.63
TraesCS3D01G357800.1	Wheat	cytosol	80.55	81.6
TraesCS3A01G364400.1	Wheat	nucleus	80.18	80.78
GSMUA_Achr9P03750_001	Banana	cytosol	58.9	68.88
EES18335	Sorghum	cytosol	72.66	67.58
HORVU3Hr1G085680.2	Barley	plastid	79.82	66.62
PGSC0003DMT400067654	Potato	nucleus	58.53	59.96
Solyc08g006550.2.1	Tomato	nucleus	58.17	59.81
VIT_13s0019g02710.t01	Wine grape	nucleus	61.83	56.54
AT5G02010.1	Thale cress	nucleus	55.6	55.49
KRH73109	Soybean	nucleus	56.51	55.3
VIT_08s0007g01380.t01	Wine grape	nucleus	61.28	54.84
CDY10476	Canola	nucleus	55.96	54.46
Bra009621.1-P	Field mustard	nucleus	55.96	54.46
CDY40325	Canola	nucleus	55.6	54.11
Solyc09g011480.2.1	Tomato	nucleus	57.61	53.4
KRG97804	Soybean	nucleus	57.98	53.29
KRH31060	Soybean	nucleus	57.98	52.84
KRH00070	Soybean	nucleus	58.72	52.2
KRH15022	Soybean	nucleus	53.03	51.52
Bra009152.1-P	Field mustard	cytosol, plastid	55.41	50.76
EES11256	Sorghum	nucleus	43.3	50.11
KRH75747	Soybean	nucleus	53.58	49.91
KRH65969	Soybean	nucleus	55.05	49.67
AT5G05940.1	Thale cress	cytosol	54.86	48.94
CDY41197	Canola	cytosol, plastid	49.72	48.92
Solyc10g086660.1.1	Tomato	nucleus	60.92	48.9
CDY40246	Canola	cytosol, plastid	49.72	48.65
PGSC0003DMT400049230	Potato	nucleus	61.65	48.55
PGSC0003DMT400005554	Potato	cytosol, plastid	57.98	47.95
CDX70109	Canola	cytosol	55.41	47.71
AT3G55660.1	Thale cress	cytosol, plastid	50.64	47.67
EER91970	Sorghum	plastid	42.75	47.65
Bra007183.1-P	Field mustard	cytosol, plastid	49.72	47.46
CDX98888	Canola	cytosol	55.23	47.18
EER99384	Sorghum	nucleus, plastid	39.82	46.87
Zm00001d047899_P001	Maize	cytosol	23.67	46.4
EER99291	Sorghum	nucleus, plastid	46.79	45.62
VIT_08s0007g01390.t01	Wine grape	nucleus	48.81	44.71
KRH49210	Soybean	nucleus, plastid	58.35	44.48
OQU84790	Sorghum	cytosol	35.23	43.64
Zm00001d023356_P001	Maize	cytosol	27.52	42.25
Zm00001d037119_P001	Maize	plastid	31.56	39.91
Zm00001d049679_P001	Maize	plastid	31.19	38.46
OQU87589	Sorghum	nucleus	36.15	38.1
KXG33101	Sorghum	mitochondrion	37.98	37.03
EES19937	Sorghum	mitochondrion	36.88	36.55
KXG30927	Sorghum	cytosol	34.13	34.44
GSMUA_Achr6P14950_001	Banana	mitochondrion	55.41	22.74

Protein Annotations

Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	MapMan:27.4.3.1	EntrezGene:8058910	UniProt:C5XPT5	EnsemblPlants:EES03886
ProteinID:EES03886	ProteinID:EES03886.1	GO:GO:0003674	GO:GO:0005085	GO:GO:0005089	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512	PFAM:PF03759	InterPro:PRONE_dom
PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF1	InterPro:RopGEF	EnsemblPlantsGene:SORBI_3003G356600	UniParc:UPI0001A851EE
RefSeq:XP_002458766.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:67492758..67496854

Molecular Weight (calculated)

60261.7 Da

IEP (calculated)

6.646

GRAVY (calculated)

-0.416

Length

545 amino acids

Sequence
(BLAST)

001: MGSAAGEEDR EARSEAAFTD SASADGSSSS SDAASTDEWP PAAAAPARKS GDCASDTDVA RQQHKHKRRA PSEMEMMKER FAKLLLGEDM SGSGKGVCTA
101: LAISNAITNL CATIFGQLWR LEPLPPEKKA MWRREMDWLL CVSDHIVELV PTWQSFPDGT RLEIMTSRPR SDLYINLPAL RKLDHMLLEI LESFRDPEFW
201: YVEQGIAAPD CDGSASFRTA FHRRDEKWWL PVPRVPPGGL HNKTRKQLQH KRDCANQILK AAMAINSNAL AEMEVPESYL DSLPKNGRAT LGDIIYRYIT
301: SDQFSPECLL DCLDLSTEYQ ALEIANRVEA SVYVWRRRVA AKPVNGLGRS SSARSSWGMV KDMMVDSEKR ELLAERAEGL LICLKQRFPG LTQTSLDMSK
401: IQHNKDVGKS ILESYSRVLE SLASNIVTRI DDLLNIDELN RHAEHFTATG DADCKIACSQ TAVPSFPVPA SGTPFMTAYT TPSFSPAQLA SPSKKERTSL
501: TPGRRSQHTR GAGTKKGLMD HVGTEIKGMI ISSGMMIDVS TTTEL

Best Arabidopsis Sequence Match ( AT5G02010.1 )
(BLAST)

001: MDGSSENLPE VEEKGRESSC CSSETTRQEE EEQSPSCTED FTASPVSSRW SVKNIDGEKK KIRSDSRVSE VEMMKERFSK LLLGEDMSGS GNGVCTALAI
101: SNAITNLCAT LFGQLWRLEP LPTEKKEMWR REMEWLLCVS DHIVEMTPTW QTFPDGTKLE IMTCRPRSDL YVNLPALRKL DNMLLEILDS FEETEFWYVD
201: QGIMAHESAA DGSSSFRKSF QRQEDKWWLP VPRVSPGGLQ ENSRKQLQHK RDCTNQILKA AMAINSITLA DMEIPESYLE SLPRKGRSCL GDLIYRYISS
301: DQFSPECLLD CLDLSSEHQA IEIANRVESS IYLWHKRTNS KPATNTKTSW EMVKELMVDA DKLELMADRA ESLLLSLKQR FPGLPQTALD MSKIQYNKDI
401: GKSILESYSR VLESLAFNIV ARIDDLLFVD DLTRHSSDQI PTTLGNNGND APKSIAVPVS NYTTPSYSPS KQELRSSITV PPSPSRFKIP HSSSVKRVLT
501: AYVTKNEPRL KNLPLERSSR SSSSERLSLE KCMKESLNVS NLDPGI

Arabidopsis Description

ROPGEF7Rop guanine nucleotide exchange factor 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZN0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.