CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75747	Soybean	nucleus	81.13	83.76
KRH00070	Soybean	nucleus	66.39	65.42
GSMUA_Achr9P03750_001	Banana	cytosol	49.5	64.16
VIT_08s0007g01380.t01	Wine grape	nucleus	61.76	61.25
AT5G02010.1	Thale cress	nucleus	53.31	58.97
Solyc09g011480.2.1	Tomato	nucleus	55.79	57.31
Bra009621.1-P	Field mustard	nucleus	52.65	56.79
CDY10476	Canola	nucleus	52.65	56.79
KRH73109	Soybean	nucleus	52.32	56.73
CDY40325	Canola	nucleus	52.48	56.61
KRH49210	Soybean	nucleus, plastid	66.72	56.36
KRG97804	Soybean	nucleus	54.14	55.14
Os01t0849100-01	Rice	cytosol	49.83	55.13
EES03886	Sorghum	cytosol	49.67	55.05
TraesCS3D01G357800.1	Wheat	cytosol	48.68	54.65
KRH31060	Soybean	nucleus	53.97	54.52
TraesCS3A01G364400.1	Wheat	nucleus	48.51	54.16
TraesCS3B01G396500.1	Wheat	cytosol	48.18	53.99
KRH15022	Soybean	nucleus	50.0	53.83
TraesCS1D01G280000.1	Wheat	cytosol	49.17	53.13
KRH15734	Soybean	cytosol	22.85	53.08
TraesCS1B01G289900.1	Wheat	cytosol	49.17	52.47
Zm00001d042861_P001	Maize	cytosol	49.67	52.36
HORVU1Hr1G072910.3	Barley	cytosol	48.51	51.95
Os05t0454200-01	Rice	nucleus	48.84	51.94
Solyc10g086660.1.1	Tomato	nucleus	58.28	51.84
PGSC0003DMT400049230	Potato	nucleus	58.61	51.16
PGSC0003DMT400005554	Potato	cytosol, plastid	55.79	51.14
EES18335	Sorghum	cytosol	49.5	51.02
Zm00001d010062_P001	Maize	peroxisome	47.85	50.09
TraesCS1A01G280900.2	Wheat	cytosol	48.34	49.58
KRH65102	Soybean	nucleus	39.4	49.48
KRG94270	Soybean	mitochondrion	8.77	47.75
VIT_08s0007g01390.t01	Wine grape	nucleus	46.52	47.23
KRH48179	Soybean	nucleus	29.14	46.93
KRH24128	Soybean	cytosol	43.87	46.65
KRH29101	Soybean	cytosol, plastid	43.71	46.64
KRH00737	Soybean	nucleus, plastid	38.74	45.7
KRH44350	Soybean	nucleus	34.11	45.37
KRH40457	Soybean	cytosol	38.08	44.92
HORVU3Hr1G085680.2	Barley	plastid	48.01	44.41
KRH39304	Soybean	nucleus	34.44	40.0
KRH09881	Soybean	cytosol	34.6	39.21
KRH47282	Soybean	nucleus	34.77	39.03
KRH23439	Soybean	nucleus	34.44	38.95
KRH48369	Soybean	mitochondrion	35.43	38.08
Zm00001d047899_P001	Maize	cytosol	16.39	35.61
KRH07240	Soybean	cytosol, nucleus, plastid	31.62	34.35
KRH07751	Soybean	cytosol, nucleus, plastid	31.46	34.23
KRH76428	Soybean	mitochondrion, nucleus	31.13	33.39
Zm00001d023356_P001	Maize	cytosol	19.54	33.24
KRH39757	Soybean	mitochondrion, nucleus	30.96	33.21
Zm00001d037119_P001	Maize	plastid	22.52	31.55
Zm00001d049679_P001	Maize	plastid	21.85	29.86
GSMUA_Achr6P14950_001	Banana	mitochondrion	48.01	21.84

Protein Annotations

Gene3D:1.20.58.2010	MapMan:27.4.3.1	EMBL:ACUP02001809	EnsemblPlantsGene:GLYMA_03G073600	GO:GO:0003674	GO:GO:0005085
GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	UniProt:I1JLY9
InterPro:IPR005512	EnsemblPlants:KRH65969	ProteinID:KRH65969	ProteinID:KRH65969.1	PFAM:PF03759	InterPro:PRONE_dom
PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF14	InterPro:RopGEF	UniParc:UPI0002953858	SEG:seg

Description

hypothetical protein

Coordinates

chr3:-:17849011..17853601

Molecular Weight (calculated)

67219.5 Da

IEP (calculated)

4.619

GRAVY (calculated)

-0.429

Length

604 amino acids

Sequence
(BLAST)

001: MEDEALIDYK SEGVEGSIEC ESGCNDESFA DLIKEKGGER SSNSEILLSE MTELDGQSQG SAEDTSSSTS MGFQEMSASN STSPRGSEDA EKKDLCNENF
101: EEQVSGLSMS VLEHELMKER FAKLLLGEDM SGSGNGVPAA LTISNAITNL CATLFGQLWR LEPLAPEKKA MWRREMECLL SVSDYIVELK PTWQTFPDGS
201: KLEVMTTRPR SDLYVNLPAL RKLDNMLLEI LDSFVDPEFR YVDQGVLAPD ADGSSSFRQA LQRLEEKWWL PVPQVPPSGL HEDSRKQLMH KRDSTKQILK
301: AAMAINSITL ADMEIPDTYL ESLPKTARAS LGDVIYRYIT TDNFSPECLL SCLNLSSEHQ AIEIANRVEA SIYIWRKKMN SRPTTTGRTT RSSSRSSWEI
401: FKDLIVEGDK METLVERAES LLLSLKQRFP ALPQTALDMS KIQCNKDVGK SILESYSRVL ESLASNIVAR IDDVLYVDDL TKHSDGVIAH KTISVPHSMS
501: GQSTPPPSYK SSLGTPNFSP ARCVSPAKGS KSPFINSSNL PQRGVGVSKV LTHFGGIERK EKFVPTLKTF DEVPFRTFDE TDMESSDCTE EDVKLNVLDR
601: AWLE

Best Arabidopsis Sequence Match ( AT3G55660.1 )
(BLAST)

001: MEDNSCIGFE GSKRFGETSK RIIGLIDSVT ESTTDSSLSS SSSGVGSSSG RSSVAERSVS SPPTKSQILG WPLGQGSWRK SSGKMKKKTP TKIDDFGFKR
101: VGTETSEIEL LKERMAKLLL GEDMSGSGEG VCPALAISNA ITNLYAAILG QQWRLEPIPS EKKLMWRREI EVLLSVSDHI VELVPSFQNF PNGNKIEVMN
201: CRPRSDLFTC LPALRKLDNM LIEILDSFGE TEFWYVDQGI VAAESARSNS FREDGDKWWL PLPRVPSDGL TEQTRKKLDH TREFTNQILK ACMSINSIAL
301: AEMEVPQSYL EALPKNGRSC LGDFLYRNIT SDNFSADHLL ESIDLSSELA VVEMANRVEA SMYVWRRRAH SRHLISLYRS TSTRWGMIVK EMMMHQTDGD
401: KREIFAERAE SLLIRLKQRF PGLRQTALDT SKIQYNKDVG KSILESYSRV LESLAYSIGV RIEEVLFMDD ISKDDGDGDD DSCSDKLRLL SKEAASGGSG
501: SLREKLSAPS LFSVSFSGTS TPYRTLSFSA STPSYSPMPL ISPINGGRGG ERAPFLSGRN IRERCGFGPK KALANYLRG

Arabidopsis Description

ROPGEF6Rop guanine nucleotide exchange factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M056]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.