Factsheet for VIT_08s0007g01380.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P03750_001	Banana	cytosol	56.49	73.82
Solyc09g011480.2.1	Tomato	nucleus	66.17	68.54
KRH00070	Soybean	nucleus	67.0	66.56
VIT_13s0019g02710.t01	Wine grape	nucleus	64.2	65.6
AT5G02010.1	Thale cress	nucleus	58.13	64.84
CDY10476	Canola	nucleus	58.46	63.57
Bra009621.1-P	Field mustard	nucleus	58.13	63.21
CDY40325	Canola	nucleus	58.13	63.21
Solyc10g086660.1.1	Tomato	nucleus	69.29	62.15
KRH65969	Soybean	nucleus	61.25	61.76
PGSC0003DMT400005554	Potato	cytosol, plastid	66.34	61.3
EES03886	Sorghum	cytosol	54.84	61.28
KRH75747	Soybean	nucleus	58.78	61.2
Os01t0849100-01	Rice	cytosol	54.68	60.99
PGSC0003DMT400049230	Potato	nucleus	69.29	60.98
TraesCS3A01G364400.1	Wheat	nucleus	53.53	60.26
TraesCS3B01G396500.1	Wheat	cytosol	53.04	59.93
TraesCS3D01G357800.1	Wheat	cytosol	52.87	59.85
TraesCS1D01G280000.1	Wheat	cytosol	53.37	58.14
Zm00001d042861_P001	Maize	cytosol	54.35	57.77
TraesCS1B01G289900.1	Wheat	cytosol	53.53	57.6
HORVU1Hr1G072910.3	Barley	cytosol	52.71	56.91
Os05t0454200-01	Rice	nucleus	53.04	56.87
KRH49210	Soybean	nucleus, plastid	66.34	56.5
EES18335	Sorghum	cytosol	54.02	56.14
Zm00001d010062_P001	Maize	peroxisome	52.22	55.11
VIT_08s0007g01390.t01	Wine grape	nucleus	53.53	54.79
TraesCS1A01G280900.2	Wheat	cytosol	52.22	53.99
VIT_03s0038g03620.t01	Wine grape	cytosol	48.28	50.09
HORVU3Hr1G085680.2	Barley	plastid	53.37	49.77
VIT_18s0001g00550.t01	Wine grape	cytosol	43.02	49.25
VIT_15s0046g02530.t01	Wine grape	plastid	39.74	48.02
VIT_09s0002g04310.t01	Wine grape	cytosol	33.83	45.37
VIT_11s0016g03740.t01	Wine grape	nucleus	35.8	39.28
Zm00001d047899_P001	Maize	cytosol	17.41	38.13
Zm00001d023356_P001	Maize	cytosol	21.18	36.34
Zm00001d037119_P001	Maize	plastid	23.48	33.18
Zm00001d049679_P001	Maize	plastid	23.32	32.13
GSMUA_Achr6P14950_001	Banana	mitochondrion	54.19	24.85
VIT_02s0087g00460.t01	Wine grape	mitochondrion, nucleus	32.02	21.38

Protein Annotations

Gene3D:1.20.58.2010	EntrezGene:100263038	wikigene:100263038	MapMan:27.4.3.1	ProteinID:CCB55536	ProteinID:CCB55536.1
UniProt:F6HL19	EMBL:FN595991	GO:GO:0003674	GO:GO:0005085	GO:GO:0005089	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005886	GO:GO:0008150	GO:GO:0016020	GO:GO:0065009	InterPro:IPR005512	EntrezGene:LOC100263038
wikigene:LOC100263038	PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF14
InterPro:RopGEF	TIGR:TC71023	UniParc:UPI00021090FB	ArrayExpress:VIT_08s0007g01380	EnsemblPlantsGene:VIT_08s0007g01380	EnsemblPlants:VIT_08s0007g01380.t01
unigene:Vvi.16522	RefSeq:XP_002272910	RefSeq:XP_002272910.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:-:15457147..15460090

Molecular Weight (calculated)

67795.9 Da

IEP (calculated)

4.884

GRAVY (calculated)

-0.492

Length

609 amino acids

Sequence
(BLAST)

001: MEGFIEKGEK VEERENGFGD SGGGIETFGS LLEEEGRECS SSSDSLTSEA TANEEQSHSS SEESSSPLPL DWSVQKQESS HSLSSGDPDG AEKPHSDEMK
101: LEKQGSTISD IEMMKERFSK LLLGEDMSGC GNGVCTALAI SNAITNLCAT LFGQLWRLEP LPAEKKAMWR REMEWLLCVS DHIVELIPSW QTFPDGSKLE
201: VMTCRPRSDL YINLPALRKL DNMLLEVLDS FEDTEFWYVD QGILAPDTDG SSSFRRPLQR QEEKWWLPVP RVPPGGLHEN SRKQLQHKRD CTNQILKAAM
301: AINSTALAEM EIPESYLEVL PKNGKSSLGD LIHRYVTSDQ FSPEYLLACL DLSSEHQALE IANRVEASVY VWRRKTNSKP ISNTSRSTSR SSWEIVKDLM
401: VDADKRELLA ERAESLLHCM KQRFPGLPQT TLDMSKIQYN KDVGKSILES YSRVLESLAS NIVARIDDVL YVDDLTKHSD QLLSISKVGV MAHKGVSIPY
501: SVPVPNTPYK TAFTTPSFSP GQLVSPANGD RSPFINDCNL LHRGFGVKKV LTDYLSIDTK ERGCGKPIEG LESISNTVQD ASAHQTGSEF FERRKEGVSS
601: LRHGSVVEG

Best Arabidopsis Sequence Match ( AT5G02010.1 )
(BLAST)

001: MDGSSENLPE VEEKGRESSC CSSETTRQEE EEQSPSCTED FTASPVSSRW SVKNIDGEKK KIRSDSRVSE VEMMKERFSK LLLGEDMSGS GNGVCTALAI
101: SNAITNLCAT LFGQLWRLEP LPTEKKEMWR REMEWLLCVS DHIVEMTPTW QTFPDGTKLE IMTCRPRSDL YVNLPALRKL DNMLLEILDS FEETEFWYVD
201: QGIMAHESAA DGSSSFRKSF QRQEDKWWLP VPRVSPGGLQ ENSRKQLQHK RDCTNQILKA AMAINSITLA DMEIPESYLE SLPRKGRSCL GDLIYRYISS
301: DQFSPECLLD CLDLSSEHQA IEIANRVESS IYLWHKRTNS KPATNTKTSW EMVKELMVDA DKLELMADRA ESLLLSLKQR FPGLPQTALD MSKIQYNKDI
401: GKSILESYSR VLESLAFNIV ARIDDLLFVD DLTRHSSDQI PTTLGNNGND APKSIAVPVS NYTTPSYSPS KQELRSSITV PPSPSRFKIP HSSSVKRVLT
501: AYVTKNEPRL KNLPLERSSR SSSSERLSLE KCMKESLNVS NLDPGI

Arabidopsis Description

ROPGEF7Rop guanine nucleotide exchange factor 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZN0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.