Factsheet for VIT_18s0001g00550.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g082110.2.1	Tomato	nucleus	54.51	64.3
VIT_03s0038g03620.t01	Wine grape	cytosol	67.67	61.33
TraesCS5A01G340900.1	Wheat	cytosol	53.57	59.62
PGSC0003DMT400025800	Potato	nucleus	61.47	59.56
TraesCS5B01G339200.1	Wheat	cytosol	53.95	59.42
TraesCS5D01G346100.1	Wheat	cytosol	53.57	58.88
GSMUA_Achr10P...	Banana	cytosol	57.33	58.88
GSMUA_Achr3P14650_001	Banana	nucleus	62.22	58.27
EER99291	Sorghum	nucleus, plastid	60.15	57.25
GSMUA_Achr1P18140_001	Banana	nucleus	59.21	56.96
Os09t0544800-01	Rice	nucleus	59.96	56.86
Zm00001d006269_P001	Maize	cytosol	40.6	56.25
GSMUA_Achr2P03580_001	Banana	nucleus	53.57	56.21
HORVU5Hr1G085510.1	Barley	nucleus, plastid	59.02	55.48
Zm00001d021464_P002	Maize	nucleus, plastid	59.4	54.77
VIT_15s0046g02530.t01	Wine grape	plastid	41.35	43.65
VIT_08s0007g01380.t01	Wine grape	nucleus	49.25	43.02
VIT_13s0019g02710.t01	Wine grape	nucleus	47.18	42.11
VIT_09s0002g04310.t01	Wine grape	cytosol	35.53	41.63
VIT_08s0007g01390.t01	Wine grape	nucleus	42.29	37.82
VIT_11s0016g03740.t01	Wine grape	nucleus	39.29	37.66
VIT_02s0087g00460.t01	Wine grape	mitochondrion, nucleus	35.15	20.5

Protein Annotations

Gene3D:1.20.58.2010	EntrezGene:100245496	wikigene:100245496	MapMan:27.4.3.1	EMBL:AM428484	ProteinID:CAN69121
ProteinID:CAN69121.1	ProteinID:CCB45402	ProteinID:CCB45402.1	UniProt:F6H0D0	EMBL:FN595227	GO:GO:0003674
GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009
InterPro:IPR005512	EntrezGene:LOC100245496	wikigene:LOC100245496	PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334
PANTHER:PTHR33101	PANTHER:PTHR33101:SF6	InterPro:RopGEF	UniParc:UPI0001985686	ArrayExpress:VIT_18s0001g00550	EnsemblPlantsGene:VIT_18s0001g00550
EnsemblPlants:VIT_18s0001g00550.t01	unigene:Vvi.15106	RefSeq:XP_002285909	RefSeq:XP_002285909.1	SEG:seg	:

Description

No Description!

Coordinates

chr18:+:1404490..1409074

Molecular Weight (calculated)

59100.4 Da

IEP (calculated)

5.049

GRAVY (calculated)

-0.298

Length

532 amino acids

Sequence
(BLAST)

001: MGNGSSEEEF DERSERLESY SLSADVSECE SLSGFSCDGD GYGGGAVSSL NYSPLVRPEV AVNSSFRAPP PLTSPVFGGG HVVIPPRKPE KELSEVELIK
101: ERFAKLLLGE DMSGGGKGIS TALAISNAIT NLSATVFGEL WKLEPLAPEK KLMWHREMEW LLCVSDSIVE LIPSVQEFPG GEGTFEVMVT RPRSDLYINL
201: PALKKVDAML LGMLDDFSDS EFYYVDRGVI VSGADNCERH SLSSPSGRSS IRQEEKWWLP FPRVPPNGLS ESVTNRLQQC KEWTNQILKA AMAINSSVLA
301: EMEIPDVYLD SLPKSGKACL GETIYRSITA RQFSPECLLD YLDLSSEYTT LEIANRIEAA IHIWRQKYLK RHTNRTKAGR SSWGGKVKVL VGYMEKNKLL
401: AQRAETILQN LRLRFPGLPQ TALDMAKIQY NKDVGQSILE SYSRVMESLA FNIMARIDDL LYIDDATKFR AVAEPISLFK QDGYGDGCPL RRQILPSPFS
501: IQNTSYVSQI AAPASYSSAI KENRDGNPID RN

Best Arabidopsis Sequence Match ( AT4G38430.1 )
(BLAST)

001: MGSLSSEEDD EVSSERCGSY SPSADISESE SSSSFSCHRF DGEGASSSIP SSPRVVAGRG FYFPAPVMLP VIGGKDVVWD DKQPDNDLSE IEMMKERFAK
101: LLLGEDMSGG GKGVCTALAI SNAITNLSAT VFGELWRLEP LAPQKKAMWR RELEWLLCVS DSIVELIPSI QQFPGGGTYE IMETRPRSDL YANLPALKKL
201: DAMLIDMLDA FSDTEFWYTD RGIVLGDCDK DSYNSPASVR QEDKWWLPCP KVPPNGLSEE ARKKLQQCRD FANQILKAAL AINSGVLAEM EIPDPYLETL
301: PKSGKECLGE IIYQYLTANK FSPECLLDCL DLSSEHQTLE IANRIEAAVH VWRQKNGRRH KKQAKLKLSS WGGKVKGLVN DNERNDFLVQ RAETLLQSLR
401: IRFPGLPQTT LDMNKIQYNK DVGQSILESY SRVMESMAFN ITARIDDVLY VDDAMRRSIS VTESLSLFSI NGLNPQKAFS VQSSPHGSPF ATPALSVASR
501: SPRRAPPLYS VKRNGTREKG IVGETEKAWS YAGNLSSRRV TGVTPERD

Arabidopsis Description

ROPGEF1Rop guanine nucleotide exchange factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZY2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.