Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g082110.2.1 | Tomato | nucleus | 78.87 | 96.01 |
| VIT_18s0001g00550.t01 | Wine grape | cytosol | 59.56 | 61.47 |
| TraesCS5B01G339200.1 | Wheat | cytosol | 49.91 | 56.73 |
| TraesCS5A01G340900.1 | Wheat | cytosol | 49.36 | 56.69 |
| PGSC0003DMT400047997 | Potato | nucleus | 59.38 | 56.5 |
| TraesCS5D01G346100.1 | Wheat | cytosol | 49.36 | 55.99 |
| GSMUA_Achr2P03580_001 | Banana | nucleus | 51.37 | 55.62 |
| GSMUA_Achr10P... | Banana | cytosol | 51.91 | 55.02 |
| GSMUA_Achr1P18140_001 | Banana | nucleus | 54.64 | 54.25 |
| GSMUA_Achr3P14650_001 | Banana | nucleus | 56.1 | 54.23 |
| Os09t0544800-01 | Rice | nucleus | 54.83 | 53.65 |
| EER99291 | Sorghum | nucleus, plastid | 54.28 | 53.31 |
| HORVU5Hr1G085510.1 | Barley | nucleus, plastid | 54.46 | 52.83 |
| Zm00001d021464_P002 | Maize | nucleus, plastid | 54.46 | 51.82 |
| Zm00001d006269_P001 | Maize | cytosol | 35.88 | 51.3 |
| PGSC0003DMT400067654 | Potato | nucleus | 42.26 | 43.61 |
| PGSC0003DMT400000136 | Potato | nucleus | 37.52 | 43.19 |
| PGSC0003DMT400042632 | Potato | nucleus | 33.88 | 39.74 |
| PGSC0003DMT400005554 | Potato | cytosol, plastid | 45.17 | 37.63 |
| PGSC0003DMT400006531 | Potato | cytosol | 33.33 | 36.45 |
| PGSC0003DMT400040374 | Potato | nucleus | 30.97 | 36.17 |
| PGSC0003DMT400049230 | Potato | nucleus | 45.54 | 36.13 |
| PGSC0003DMT400001020 | Potato | nucleus | 36.25 | 35.86 |
| PGSC0003DMT400097197 | Potato | nucleus | 34.97 | 34.1 |
| PGSC0003DMT400053650 | Potato | cytosol, nucleus, plastid | 34.24 | 33.39 |
| PGSC0003DMT400075550 | Potato | extracellular | 11.66 | 31.07 |
Protein Annotations
| Gene3D:1.20.58.2010 | EntrezGene:102586885 | MapMan:27.4.3.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005085 |
| GO:GO:0005089 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | GO:GO:0065009 | InterPro:IPR005512 |
| UniProt:M1AM32 | PFAM:PF03759 | EnsemblPlantsGene:PGSC0003DMG400009963 | PGSC:PGSC0003DMG400009963 | EnsemblPlants:PGSC0003DMT400025800 | InterPro:PRONE_dom |
| PFscan:PS51334 | PANTHER:PTHR33101 | PANTHER:PTHR33101:SF6 | InterPro:RopGEF | UniParc:UPI000294FAA4 | RefSeq:XP_006342098.1 |
| SEG:seg | : | : | : | : | : |
Description
Rop guanine nucleotide exchange factor [Source:PGSC_GENE;Acc:PGSC0003DMG400009963]
Coordinates
chr4:-:71356521..71361129
Molecular Weight (calculated)
61023.4 Da
IEP (calculated)
5.226
GRAVY (calculated)
-0.333
Length
549 amino acids
Sequence
(BLAST)
(BLAST)
001: MESAPSTDDE FDLQSERFDD SYSLSADISE SETCSSTSTF SCRQQDASTS LSSTSTLHFN SNSGFAELPT VMLPVVGGRH VIIPGEKPDK PEIELTEVEL
101: MKERFAKLLL GEDMSGGGKG VCTAFAISNA ITNLAATVFG ELWKLESLAP QKKSMWCREM DWLLSVSDSI VELVPSEQEF PGGGTFEVMV TQPRSDLYVN
201: LPALKKLDAM LIGMLDAFSG CEFHYVDRGI LVADGEDVEA YPCSPSSHRP SSRLEEKWWL PFPKVPPKGL LEETRKRLRQ CRECTNQIFK AAQAINASTL
301: SEMEVPKDYL EGLPKSGKAS LGEILHRYIT ADHFSPECLF DYLDLSSEYT TLEIANRIEA AMHVWKQKCE KKNLNRSKSG KSSWGGTVKG LVGLVERYQL
401: LSQRAENLLR NLKLNFPGLP QTALDMTKIQ YNKDVGHSIL ESYSRVLESL AFNLMARIED LLYVDDATRR RAAEESAAML DQQGFFNAQS LQNQVPCASN
501: FARKKSLPFS SKAFTSLDIV AESPERTAHS IGHTVLSSPR AEKHKALSF
101: MKERFAKLLL GEDMSGGGKG VCTAFAISNA ITNLAATVFG ELWKLESLAP QKKSMWCREM DWLLSVSDSI VELVPSEQEF PGGGTFEVMV TQPRSDLYVN
201: LPALKKLDAM LIGMLDAFSG CEFHYVDRGI LVADGEDVEA YPCSPSSHRP SSRLEEKWWL PFPKVPPKGL LEETRKRLRQ CRECTNQIFK AAQAINASTL
301: SEMEVPKDYL EGLPKSGKAS LGEILHRYIT ADHFSPECLF DYLDLSSEYT TLEIANRIEA AMHVWKQKCE KKNLNRSKSG KSSWGGTVKG LVGLVERYQL
401: LSQRAENLLR NLKLNFPGLP QTALDMTKIQ YNKDVGHSIL ESYSRVLESL AFNLMARIED LLYVDDATRR RAAEESAAML DQQGFFNAQS LQNQVPCASN
501: FARKKSLPFS SKAFTSLDIV AESPERTAHS IGHTVLSSPR AEKHKALSF
001: MGSLSSEEDD EVSSERCGSY SPSADISESE SSSSFSCHRF DGEGASSSIP SSPRVVAGRG FYFPAPVMLP VIGGKDVVWD DKQPDNDLSE IEMMKERFAK
101: LLLGEDMSGG GKGVCTALAI SNAITNLSAT VFGELWRLEP LAPQKKAMWR RELEWLLCVS DSIVELIPSI QQFPGGGTYE IMETRPRSDL YANLPALKKL
201: DAMLIDMLDA FSDTEFWYTD RGIVLGDCDK DSYNSPASVR QEDKWWLPCP KVPPNGLSEE ARKKLQQCRD FANQILKAAL AINSGVLAEM EIPDPYLETL
301: PKSGKECLGE IIYQYLTANK FSPECLLDCL DLSSEHQTLE IANRIEAAVH VWRQKNGRRH KKQAKLKLSS WGGKVKGLVN DNERNDFLVQ RAETLLQSLR
401: IRFPGLPQTT LDMNKIQYNK DVGQSILESY SRVMESMAFN ITARIDDVLY VDDAMRRSIS VTESLSLFSI NGLNPQKAFS VQSSPHGSPF ATPALSVASR
501: SPRRAPPLYS VKRNGTREKG IVGETEKAWS YAGNLSSRRV TGVTPERD
101: LLLGEDMSGG GKGVCTALAI SNAITNLSAT VFGELWRLEP LAPQKKAMWR RELEWLLCVS DSIVELIPSI QQFPGGGTYE IMETRPRSDL YANLPALKKL
201: DAMLIDMLDA FSDTEFWYTD RGIVLGDCDK DSYNSPASVR QEDKWWLPCP KVPPNGLSEE ARKKLQQCRD FANQILKAAL AINSGVLAEM EIPDPYLETL
301: PKSGKECLGE IIYQYLTANK FSPECLLDCL DLSSEHQTLE IANRIEAAVH VWRQKNGRRH KKQAKLKLSS WGGKVKGLVN DNERNDFLVQ RAETLLQSLR
401: IRFPGLPQTT LDMNKIQYNK DVGQSILESY SRVMESMAFN ITARIDDVLY VDDAMRRSIS VTESLSLFSI NGLNPQKAFS VQSSPHGSPF ATPALSVASR
501: SPRRAPPLYS VKRNGTREKG IVGETEKAWS YAGNLSSRRV TGVTPERD
Arabidopsis Description
ROPGEF1Rop guanine nucleotide exchange factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZY2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.