Factsheet for PGSC0003DMT400040374

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400063227
PGSC0003DMT400063229

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24620.1	PGSC0003DMT400063227	AT5G62880.1	22500990
AT3G24620.1	PGSC0003DMT400063229	AT5G62880.1	22500990
AT4G13240.1	PGSC0003DMT400063227	AT5G62880.1	22500990
AT4G13240.1	PGSC0003DMT400063229	AT5G62880.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g032730.2.1	Tomato	nucleus	77.45	89.0
GSMUA_Achr5P06900_001	Banana	cytosol	57.45	64.13
GSMUA_Achr2P09130_001	Banana	cytosol	50.64	60.87
GSMUA_Achr6P14020_001	Banana	cytosol	54.47	59.4
PGSC0003DMT400001020	Potato	nucleus	69.57	58.92
VIT_09s0002g04310.t01	Wine grape	cytosol	55.74	57.71
GSMUA_Achr4P10530_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	52.13	56.84
GSMUA_Achr3P15410_001	Banana	nucleus	57.87	54.84
TraesCS6A01G196000.1	Wheat	cytosol	50.85	54.82
OQU84790	Sorghum	cytosol	50.85	54.32
PGSC0003DMT400042632	Potato	nucleus	54.04	54.27
GSMUA_Achr3P03410_001	Banana	nucleus	57.66	53.56
KRH39304	Soybean	nucleus	59.15	53.46
TraesCSU01G211800.1	Wheat	cytosol	37.02	53.37
CDY03296	Canola	nucleus	37.23	52.87
PGSC0003DMT400006531	Potato	cytosol	56.17	52.59
Zm00001d053307_P002	Maize	cytosol, plastid	53.83	52.38
TraesCSU01G217800.1	Wheat	cytosol	37.45	51.76
TraesCSU01G211700.1	Wheat	cytosol	37.45	51.76
KRH48369	Soybean	mitochondrion	61.06	51.07
AT3G24620.1	Thale cress	nucleus	56.81	51.05
Bra015068.1-P	Field mustard	nucleus	55.53	50.1
CDX77402	Canola	nucleus	55.53	50.1
Bra013249.1-P	Field mustard	nucleus, plastid	55.11	50.0
CDY46477	Canola	nucleus	55.32	49.9
TraesCS6D01G183300.1	Wheat	mitochondrion	54.04	49.9
Bra036671.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	53.19	49.51
Os02t0272300-01	Rice	plasma membrane	53.83	49.32
AT4G13240.1	Thale cress	nucleus	53.83	48.94
CDY39783	Canola	mitochondrion	54.47	48.76
CDY03297	Canola	mitochondrion	54.26	48.76
HORVU6Hr1G050860.4	Barley	mitochondrion	52.13	48.71
PGSC0003DMT400097197	Potato	nucleus	58.09	48.49
Zm00001d016001_P002	Maize	mitochondrion	53.19	46.82
CDX93028	Canola	nucleus	39.79	39.45
PGSC0003DMT400000136	Potato	nucleus	37.02	36.48
PGSC0003DMT400067654	Potato	nucleus	37.66	33.27
PGSC0003DMT400047997	Potato	nucleus	38.51	31.37
PGSC0003DMT400025800	Potato	nucleus	36.17	30.97
PGSC0003DMT400075550	Potato	extracellular	12.34	28.16
PGSC0003DMT400053650	Potato	cytosol, nucleus, plastid	33.4	27.89
PGSC0003DMT400049230	Potato	nucleus	39.79	27.02
PGSC0003DMT400005554	Potato	cytosol, plastid	37.87	27.01

Protein Annotations

Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	MapMan:27.4.3.1	GO:GO:0003674	GO:GO:0005085	GO:GO:0005089
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512	UniProt:M1B9T4
PFAM:PF03759	EnsemblPlantsGene:PGSC0003DMG400015634	PGSC:PGSC0003DMG400015634	EnsemblPlants:PGSC0003DMT400040374	InterPro:PRONE_dom	PFscan:PS51334
PANTHER:PTHR33101	PANTHER:PTHR33101:SF10	InterPro:RopGEF	UniParc:UPI0002969575	SEG:seg	:

Description

Pollen-specific kinase partner protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015634]

Coordinates

chr7:+:16781388..16783352

Molecular Weight (calculated)

53086.8 Da

IEP (calculated)

4.870

GRAVY (calculated)

-0.584

Length

470 amino acids

Sequence
(BLAST)

001: MVKEENKYQK SRSFNFRKIL ELPSKLAHSI GGESSSDDEE EIGGGGIIPL QNQQIDSTAF DPSLVSTLTT KVPKAKPSDM ELMKERFSKM LLGEDMSGGG
101: KGVSSALALS NAITNLAASI FGEQSKLEPM SQKRKERWRK EIDWLLSVTD YIVEFVPGQQ KSKDGTNMED CLDNFKDAKE FWYISKDADD SEKGVQRSDK
201: WWLPTIKVPP KGLSDESRRW LQYQKDCVNQ VLKASMAINA QILAEMEVPE NYIDSLPKNG RSSLGDSIYK NITVEFFDPE QFLSTMDMSS EHKVVNLKDR
301: IEASIVIWKR KMHQKDAKSS WVPAVSLEKR ELFEERAETI LLLIKHRFPE IPQSSLEISK IQYNRDVGYS VLESYSRVLE SLANTVTSRI EDVLYADSVA
401: QDPSLAIAKW NRSADSSPQK PQSVVSTPKQ ESDCTAETPT SMTLFDFMGW NMEQGEADIN KTNLEALPQT

Best Arabidopsis Sequence Match ( AT1G52240.1 )
(BLAST)

001: MVKAMEQEQE TYKSRLFHFK NMNENSASRH VKSWSSDCAM RMDGSDNLDD DDNDMMMFRS QPGKCGSVDR PSLPIGGVTP NRNDKLPRVS SSDSMEALII
101: LQAAMEQMKE KFSKLLLGED MSGGGKGVSS ALALSNAITN LAASAFGEQR RLEPMAVDRK TRWRREIGWL ISVADYIVEF APTQQTNKDG TSMEVMSTRQ
201: RTDLLCNIPA LKKLDAMLLD CLDKFKDQDE FYYVKKDSPD SCETRNDEKW WLPAVKVPPN GLSEISRRFL QSQKECVNQV LKAAMAINAQ VLSEMEIPES
301: YLESLPKNGR ASLGDVIYRM ITVEMFDADQ FLIEMDLSSE HKILDLKNRI EASIVIWKRK MVQKDTKSPW GSTVSIEKRE QFEERAETIL LLLKQGFPGI
401: SQSSLDISKI QFNRDVGLAI LESYSRVLES LAHTVMSRIE DVLYADQLTQ EPTNNAPSKN RYSLKENEKL REERLSFTED MASGTLSDVM QWGNKNNEMK
501: KESFFGDREK PLLSKVTGIM TNNKKSSYLD NLGAMRSPTA RYS

Arabidopsis Description

ROPGEF11ROPGEF11 [Source:UniProtKB/TrEMBL;Acc:A0A178W8V0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.