CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY00332
CDY30738
CDY45748
CDY56740
CDY68200

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24620.1	CDY00332	AT5G62880.1	22500990
AT3G24620.1	CDY30738	AT5G62880.1	22500990
AT3G24620.1	CDY45748	AT5G62880.1	22500990
AT3G24620.1	CDY56740	AT5G62880.1	22500990
AT3G24620.1	CDY68200	AT5G62880.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015068.1-P	Field mustard	nucleus	100.0	100.0
CDY46477	Canola	nucleus	99.23	99.23
AT3G24620.1	Thale cress	nucleus	92.51	92.16
CDY03297	Canola	mitochondrion	91.55	91.2
CDY39783	Canola	mitochondrion	91.36	90.67
CDY03296	Canola	nucleus	57.01	89.73
CDX93028	Canola	nucleus	66.79	73.42
Solyc07g032730.2.1	Tomato	nucleus	50.67	64.55
VIT_09s0002g04310.t01	Wine grape	cytosol	55.09	63.22
CDX67930	Canola	nucleus	55.47	59.34
KRH39304	Soybean	nucleus	57.39	57.5
KRH48369	Soybean	mitochondrion	61.04	56.58
CDY44926	Canola	nucleus	52.98	55.87
PGSC0003DMT400040374	Potato	nucleus	50.1	55.53
CDY42277	Canola	nucleus	52.4	55.26
CDX79407	Canola	cytosol, endoplasmic reticulum, nucleus	56.81	55.12
CDX88884	Canola	cytosol, plastid	51.44	54.92
CDY58963	Canola	cytosol	38.58	54.03
PGSC0003DMT400001020	Potato	nucleus	57.39	53.87
Solyc12g007150.1.1	Tomato	nucleus	56.81	53.33
CDX70882	Canola	cytosol	51.63	53.27
CDY45633	Canola	nucleus	53.36	53.15
CDX92519	Canola	plastid	50.48	52.92
CDX87879	Canola	nucleus	53.36	49.91
CDX97723	Canola	nucleus	49.9	48.87
CDY30136	Canola	nucleus	49.71	47.09
CDY67259	Canola	nucleus	53.74	46.59
CDY52982	Canola	nucleus	53.55	46.42
CDY28381	Canola	nucleus	50.67	44.07
CDY20181	Canola	nucleus	50.48	43.33
CDY69871	Canola	cytosol	9.21	42.86
CDX74772	Canola	nucleus, plastid	35.12	40.67
CDY18892	Canola	nucleus	35.12	40.49
CDY57376	Canola	cytosol, extracellular, nucleus	5.76	40.0
CDY07216	Canola	cytosol	35.32	38.74
CDY51157	Canola	nucleus	33.78	38.68
CDY70620	Canola	nucleus	34.74	38.59
CDX77457	Canola	cytosol	38.77	36.93
CDX85176	Canola	cytosol	38.39	36.56
CDY12411	Canola	cytosol	8.83	35.66
CDY40246	Canola	cytosol, plastid	37.43	35.01
CDY41197	Canola	cytosol, plastid	37.04	34.84
CDY40325	Canola	nucleus	36.47	33.93
CDY10476	Canola	nucleus	36.47	33.93
CDX84189	Canola	cytosol	30.52	32.38
CDY31706	Canola	cytosol	31.09	32.21
CDX70109	Canola	cytosol	38.58	31.75
CDX98888	Canola	cytosol	38.2	31.19
CDY62299	Canola	cytosol, nucleus, plastid	32.82	30.54
CDY12303	Canola	nucleus	32.25	29.84
CDX91908	Canola	cytosol	34.74	27.63

Protein Annotations

EnsemblPlants:CDX77402	EnsemblPlantsGene:GSBRNA2T00128238001	Gene3D:1.20.58.2010	GO:A0A078CKY6	GO:GO:0003674	GO:GO:0005089
GO:GO:0005488	GO:GO:0005515	InterPro:IPR005512	InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101
PANTHER:PTHR33101:SF10	PFAM:PF03759	PFscan:PS51334	ProteinID:CDX77402	ProteinID:CDX77402.1	SEG:seg
UniParc:UPI0002540C73	MapMan:27.4.3.1	:	:	:	:

Description

BnaA07g05400D

Coordinates

chrLK031811:+:306505..309009

Molecular Weight (calculated)

58236.9 Da

IEP (calculated)

5.622

GRAVY (calculated)

-0.569

Length

521 amino acids

Sequence
(BLAST)

001: MVAALERGLS ASKSFNFKRM FESSSTKHQQ PQTIVIENGD SHLVESNTPE SQNSDSLSES PVESIPPMIS PLNRPGKRPD RQQADTEMLK DRFAKLLLGE
101: DMSGGGKGVS SALALSNAIT NLAASIFGEQ TKLQPMPQDR QARWKKEIDW LLSVTDHIVE FVPSQQMSKD GVCTEIMVTR QRGDLLMNIP ALRKLDAMLI
201: DTLDNFKGHN EFYYVSRDSE EGKQASNARS NDKWWLPPVK VPPGGLSEPA RRMLYFQKDS VTQVQKAAMA INAQVLSEMA IPESYIDSLP KNGRASLGDS
301: IYKSITEEWF DPEQFLSMLD MSTEHKVLDL KNKIEASVVI WKRKLHVKDS KSSWGSAVSL EKRELFEERA ETILVLLKQK FPGLPQSSLD ISKIQFNKDV
401: GQAVLESYSR ILESLAYTVM SRIEDVLYTD SLALKETLLA EETSDGGRTT ETDSESAGSS NSGEETEKLD PRYSKTLLDF MGWSDNSSKS SDKPTKSPGL
501: TPKKFSYLEN LNGFRSPKAR H

Best Arabidopsis Sequence Match ( AT3G24620.1 )
(BLAST)

001: MVAALERGLS ASKSFNFKRM FDSSSTKQQQ SQTIVVENGD SHIVESNTPE SQNSDSFVES PVESSLPMIS PLTRPGKRSE RQQADMEMMK DRFAKLLLGE
101: DMSGGGKGVS SALALSNAIT NLAASIFGEQ TKLQPMPQDR QARWKKEIDW LLSVTDHIVE FVPSQQTSKD GVCTEIMVTR QRGDLLMNIP ALRKLDAMLI
201: DTLDNFRGHN EFWYVSRDSE EGQQARNDRT NDKWWLPPVK VPPGGLSEPS RRMLYFQKDS VTQVQKAAMA INAQVLSEME IPESYIDSLP KNGRASLGDS
301: IYKSITEEWF DPEQFLAMLD MSTEHKVLDL KNRIEASVVI WKRKLHTKDT KSSWGSAVSL EKRELFEERA ETILVLLKQK FPGLPQSSLD ISKIQFNKDV
401: GQAVLESYSR ILESLAYTVM SRIEDVLYTD TLALKQTLLA EETSDGGRTT ETDSESAGSS NSGEEAEKHD PHSKTLLDFM GWNDNSSKGG DKPTKSPNLT
501: PKKLSYLEKL ENLNGFRSPK DRH

Arabidopsis Description

ROPGEF8Rho guanine nucleotide exchange factor 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV40]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.