Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G24620.1 | CDY00332 | AT5G62880.1 | 22500990 |
| AT3G24620.1 | CDY30738 | AT5G62880.1 | 22500990 |
| AT3G24620.1 | CDY45748 | AT5G62880.1 | 22500990 |
| AT3G24620.1 | CDY56740 | AT5G62880.1 | 22500990 |
| AT3G24620.1 | CDY68200 | AT5G62880.1 | 22500990 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036671.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 97.28 | 63.76 |
| CDY03297 | Canola | mitochondrion | 98.19 | 62.14 |
| CDY39783 | Canola | mitochondrion | 96.98 | 61.14 |
| CDX77402 | Canola | nucleus | 89.73 | 57.01 |
| CDY46477 | Canola | nucleus | 89.12 | 56.62 |
| AT3G24620.1 | Thale cress | nucleus | 89.12 | 56.41 |
| CDX93028 | Canola | nucleus | 77.04 | 53.8 |
| CDY58963 | Canola | cytosol | 53.78 | 47.85 |
| VIT_09s0002g04310.t01 | Wine grape | cytosol | 61.33 | 44.71 |
| Solyc07g032730.2.1 | Tomato | nucleus | 54.08 | 43.77 |
| CDX67930 | Canola | nucleus | 55.89 | 37.99 |
| CDY44926 | Canola | nucleus | 56.5 | 37.85 |
| KRH48369 | Soybean | mitochondrion | 63.75 | 37.54 |
| CDY42277 | Canola | nucleus | 55.89 | 37.45 |
| PGSC0003DMT400040374 | Potato | nucleus | 52.87 | 37.23 |
| KRH39304 | Soybean | nucleus | 57.7 | 36.73 |
| CDX88884 | Canola | cytosol, plastid | 54.08 | 36.68 |
| Solyc12g007150.1.1 | Tomato | nucleus | 61.03 | 36.4 |
| PGSC0003DMT400001020 | Potato | nucleus | 60.73 | 36.22 |
| CDX92519 | Canola | plastid | 54.08 | 36.02 |
| CDX70882 | Canola | cytosol | 54.68 | 35.84 |
| CDX79407 | Canola | cytosol, endoplasmic reticulum, nucleus | 56.19 | 34.64 |
| CDY45633 | Canola | nucleus | 53.78 | 34.03 |
| CDY69871 | Canola | cytosol | 10.88 | 32.14 |
| CDX87879 | Canola | nucleus | 53.78 | 31.96 |
| CDX97723 | Canola | nucleus | 50.45 | 31.39 |
| CDY67259 | Canola | nucleus | 54.68 | 30.12 |
| CDY52982 | Canola | nucleus | 54.38 | 29.95 |
| CDY30136 | Canola | nucleus | 49.55 | 29.82 |
| CDY28381 | Canola | nucleus | 51.66 | 28.55 |
| CDY20181 | Canola | nucleus | 51.06 | 27.84 |
| CDX74772 | Canola | nucleus, plastid | 35.35 | 26.0 |
| CDY18892 | Canola | nucleus | 35.35 | 25.89 |
| CDY12411 | Canola | cytosol | 9.97 | 25.58 |
| CDY07216 | Canola | cytosol | 34.74 | 24.21 |
| CDY70620 | Canola | nucleus | 34.14 | 24.09 |
| CDY51157 | Canola | nucleus | 32.33 | 23.52 |
| CDX77457 | Canola | cytosol | 38.07 | 23.03 |
| CDY40246 | Canola | cytosol, plastid | 38.37 | 22.8 |
| CDY41197 | Canola | cytosol, plastid | 38.07 | 22.74 |
| CDX85176 | Canola | cytosol | 37.46 | 22.67 |
| CDY10476 | Canola | nucleus | 37.76 | 22.32 |
| CDY40325 | Canola | nucleus | 37.46 | 22.14 |
| CDX70109 | Canola | cytosol | 38.67 | 20.22 |
| CDX98888 | Canola | cytosol | 38.37 | 19.91 |
| CDY31706 | Canola | cytosol | 29.31 | 19.28 |
| CDX84189 | Canola | cytosol | 28.4 | 19.14 |
| CDY62299 | Canola | cytosol, nucleus, plastid | 31.12 | 18.39 |
| CDY12303 | Canola | nucleus | 31.12 | 18.29 |
| CDX91908 | Canola | cytosol | 34.44 | 17.4 |
| CDY57376 | Canola | cytosol, extracellular, nucleus | 1.51 | 6.67 |
Protein Annotations
| Gene3D:1.20.58.2010 | MapMan:27.4.3.1 | GO:A0A078EPZ3 | EnsemblPlants:CDY03296 | ProteinID:CDY03296 | ProteinID:CDY03296.1 |
| GO:GO:0003674 | GO:GO:0005089 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00115868001 | InterPro:IPR005512 |
| PFAM:PF03759 | InterPro:PRONE_dom | PFscan:PS51334 | PANTHER:PTHR33101 | PANTHER:PTHR33101:SF10 | InterPro:RopGEF |
| UniParc:UPI0004EEF9B3 | SEG:seg | : | : | : | : |
Description
BnaC09g10520D
Coordinates
chrLK031942:-:457980..463957
Molecular Weight (calculated)
37228.8 Da
IEP (calculated)
5.739
GRAVY (calculated)
-0.598
Length
331 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFLQIIDTL DNFRGHNEFY YVSRDSEEGK QASNARSNDK WWLPPVKVPP GGLSEPARKM LYFQKDSVTQ VQKAAMAINA QVLSEMAIPE SYIDSLPKNG
101: RSSLGDSIYK SITEEWFDPA QFLSMLDLST EHNVLDLKNR IEASVVIWKR KLHLKDNKSS WGSAVSLGKR ELFEERAETI LILLKQKFPG LPQSSLDISK
201: IQFNKDVGQA VLESYSRILE SLAYTVMSRI EDVLYTDSLA QKQALLAEAT SDAGRTSETD SESAGSSHSG DETEKLDPHY SKTLLDFMGW SDNSSKGGDK
301: PTKSPSLTPK KLSYLEKLEN FNGFRSPKDR H
101: RSSLGDSIYK SITEEWFDPA QFLSMLDLST EHNVLDLKNR IEASVVIWKR KLHLKDNKSS WGSAVSLGKR ELFEERAETI LILLKQKFPG LPQSSLDISK
201: IQFNKDVGQA VLESYSRILE SLAYTVMSRI EDVLYTDSLA QKQALLAEAT SDAGRTSETD SESAGSSHSG DETEKLDPHY SKTLLDFMGW SDNSSKGGDK
301: PTKSPSLTPK KLSYLEKLEN FNGFRSPKDR H
001: MVPSLERGIS ITSSFNLDRM FDSSPGKEQQ QPHLAETTMP ESQTQDSLGG SPVETSRPMT SRLISRRQDK QQSETEMMKD RFTKLLLGED MSGGGKGVSS
101: ALALSNAITN LAASIFGEQT KLQPMAPDRR ARWKKEIDWL LSVTDHIVEF VPSQQISKEG VCTEIMVTRQ RGDLLMNIPA LRKLDAMLID TLDNFRGHNE
201: FWYVSRDSEE GKQARNERTK DKWWLPPVKV PPNGLSESAR RMLHFQKDSV SQVQKAAMAI NAQVLSEMAI PDSYIESLPK NGRVSLGDSL YKSITEEWFD
301: PEQFLSTLDL STEHKVLDVK NRIEASIVIW KRKLHLKDNK SSWGSAVSLE KRELFEERAE TILVLLKQKF PGLPQSSLDI SKIQYNKDVG HAVLESYSRI
401: LESLGYTEMS RIDDVLYADS LARKQCTGEE TSDGGKIATE TDSASAGSSN YSGEEIEKLE SQNSSKTTLL DFIGWSDNSS KGQSEKPPKS PRMTPKKLSY
501: LEKLENLNGF RSPKDRH
101: ALALSNAITN LAASIFGEQT KLQPMAPDRR ARWKKEIDWL LSVTDHIVEF VPSQQISKEG VCTEIMVTRQ RGDLLMNIPA LRKLDAMLID TLDNFRGHNE
201: FWYVSRDSEE GKQARNERTK DKWWLPPVKV PPNGLSESAR RMLHFQKDSV SQVQKAAMAI NAQVLSEMAI PDSYIESLPK NGRVSLGDSL YKSITEEWFD
301: PEQFLSTLDL STEHKVLDVK NRIEASIVIW KRKLHLKDNK SSWGSAVSLE KRELFEERAE TILVLLKQKF PGLPQSSLDI SKIQYNKDVG HAVLESYSRI
401: LESLGYTEMS RIDDVLYADS LARKQCTGEE TSDGGKIATE TDSASAGSSN YSGEEIEKLE SQNSSKTTLL DFIGWSDNSS KGQSEKPPKS PRMTPKKLSY
501: LEKLENLNGF RSPKDRH
Arabidopsis Description
ROPGEF9Rop guanine nucleotide exchange factor 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVQ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.