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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra027189.1-P Field mustard nucleus 97.74 98.11
CDY30136 Canola nucleus 95.49 92.36
AT3G16130.1 Thale cress nucleus 76.88 76.02
CDY28381 Canola nucleus 79.89 70.95
CDY20181 Canola nucleus 79.51 69.69
CDY45633 Canola nucleus 61.28 62.33
CDX87879 Canola nucleus 61.65 58.89
CDX67930 Canola nucleus 51.69 56.47
CDY67259 Canola nucleus 62.78 55.57
CDY52982 Canola nucleus 62.41 55.24
Zm00001d012691_P001 Maize cytosol, extracellular, mitochondrion, plastid 28.2 52.26
CDX79407 Canola cytosol, endoplasmic reticulum, nucleus 51.5 51.02
CDY03296 Canola nucleus 31.39 50.45
TraesCS3D01G296400.1 Wheat cytosol 43.8 50.43
CDY46477 Canola nucleus 49.25 50.29
CDX77402 Canola nucleus 48.87 49.9
TraesCS3B01G331000.1 Wheat nucleus 43.42 49.68
HORVU3Hr1G073200.1 Barley nucleus 43.98 49.16
CDY03297 Canola mitochondrion 48.31 49.14
CDY39783 Canola mitochondrion 48.31 48.95
TraesCS3A01G305500.1 Wheat cytosol, mitochondrion, nucleus, plastid 43.05 48.72
Zm00001d043383_P001 Maize nucleus 46.43 47.23
OQU87589 Sorghum nucleus 45.86 47.2
CDY44926 Canola nucleus 43.23 46.56
TraesCS3B01G304200.1 Wheat plastid 44.92 46.32
Os01t0760300-01 Rice plasma membrane 45.3 46.26
CDY42277 Canola nucleus 42.86 46.15
TraesCS3D01G270200.1 Wheat plastid 44.74 45.95
CDY58963 Canola cytosol 31.95 45.7
CDX88884 Canola cytosol, plastid 41.73 45.49
Zm00001d038989_P002 Maize nucleus, plastid 43.61 45.49
CDX92519 Canola plastid 42.29 45.27
EES19937 Sorghum mitochondrion 45.86 44.36
Os01t0675000-01 Rice mitochondrion 45.86 44.04
CDX70882 Canola cytosol 41.73 43.96
Os05t0560100-01 Rice mitochondrion 46.8 43.76
TraesCS1A01G392100.1 Wheat plastid 45.86 43.49
TraesCS1D01G400200.2 Wheat plastid 45.86 43.19
TraesCS1B01G420200.1 Wheat nucleus, plastid 45.49 42.83
KXG33101 Sorghum mitochondrion 44.92 42.75
Zm00001d009549_P002 Maize mitochondrion 43.8 42.21
CDY57376 Canola cytosol, extracellular, nucleus 5.83 41.33
Zm00001d043889_P001 Maize mitochondrion 44.36 39.01
TraesCS3A01G270400.1 Wheat plastid 45.68 38.63
HORVU3Hr1G062030.1 Barley nucleus, plastid 44.74 38.33
CDX74772 Canola nucleus, plastid 31.95 37.78
CDY18892 Canola nucleus 31.95 37.61
CDX93028 Canola nucleus 33.46 37.55
CDY69871 Canola cytosol 7.89 37.5
CDY51157 Canola nucleus 31.58 36.92
CDY07216 Canola cytosol 32.89 36.84
CDY70620 Canola nucleus 32.33 36.67
CDY40325 Canola nucleus 37.78 35.89
CDY10476 Canola nucleus 37.78 35.89
HORVU1Hr1G086590.2 Barley plastid 45.11 35.61
CDX77457 Canola cytosol 36.28 35.28
CDX85176 Canola cytosol 35.9 34.92
CDY41197 Canola cytosol, plastid 34.4 33.03
CDY40246 Canola cytosol, plastid 34.4 32.85
CDX70109 Canola cytosol 37.41 31.44
CDY31706 Canola cytosol 29.7 31.41
CDX84189 Canola cytosol 28.95 31.36
CDX98888 Canola cytosol 36.65 30.56
CDY62299 Canola cytosol, nucleus, plastid 31.77 30.18
CDY12303 Canola nucleus 31.39 29.66
CDY12411 Canola cytosol 6.95 28.68
CDX91908 Canola cytosol 32.33 26.26
Protein Annotations
EnsemblPlants:CDX97723EnsemblPlantsGene:GSBRNA2T00104978001Gene3D:1.20.58.1310Gene3D:1.20.58.2010GO:A0A078EED6GO:GO:0003674
GO:GO:0005089GO:GO:0005488GO:GO:0005515InterPro:IPR005512InterPro:PRONE_domInterPro:RopGEF
PANTHER:PTHR33101PANTHER:PTHR33101:SF10PFAM:PF03759PFscan:PS51334ProteinID:CDX97723ProteinID:CDX97723.1
UniParc:UPI0004EDF7FCMapMan:27.4.3.1::::
Description
BnaA05g23560D
Coordinates
chrLK031900:+:1198243..1200369
Molecular Weight (calculated)
60662.3 Da
IEP (calculated)
5.680
GRAVY (calculated)
-0.594
Length
532 amino acids
Sequence
(BLAST)
001: MEMVKAVERE DKESHKFGLY DFENMKEKNA SSRNVKRWNS SSALRTEDPD IDDDTVFKRT AVSSFLPMLP IRPPQTCEAT EREQMKERFA KLLLGEDMSG
101: GGKGVSSALA LSNAVTNLSA SAFGEQRRLE PMSEDRKERW RREMGWLLSV TDHIVEFSPT QQTNKDGSSI EVMTTRQRTD LVSNIPALKN LDVMLTDCLD
201: KFKDQDEFYY VTSDSPEHLN SNSSRNNDKW WLPTVKVPPN GLSETSKRFL LSQKECVSQV LKSALAINAE VLSQMETPES YIDSLPKNGK ASLGDMIYRM
301: ITLDMFDVEK FLLEMDLSSE HKILDLQDKI EASVVIWKRK IVQKDNNKSS SPFSTNLSME KRQLLEERAE TILLLIKLRF PGISQSSLDI SKIQFNKDIG
401: LAIMESYSRV IESLAHTVLS RIEDVLVADQ LTQDPESLLC KRYIVKETES PKKEEERNFC LLEERPIKQK ATISLSEVMQ WNMDDKNDAP LKDSGKKLLT
501: RVSTMIMANN KKSTSYLESH GTTRSPRAGQ YS
Best Arabidopsis Sequence Match ( AT3G16130.1 )
(BLAST)
001: MVKASEKEHE KYKPKLFDLE NVKKKNSSSR HFKRWNSDSA LRIEDPDIDD GTVFKKTATS SIQPILPVLA MDEQPQPREA TDEESQKDSE LEQMKDKFAK
101: LLLGEDMSGG SKGVSSALAL SNAITNLAAS AFGEIRRLEA ISEDKKERWR REIGWLLSVT DHIVEFSPTH QTNEDGSSME VMTTKQRTDL VSNIPSLKKL
201: DEMLLDCLDK FKDQDEFYYV TPGSPESENS NSTRNDDKWW LPIVKVPPKG LSETLKRFLL SQRECVCQVL NSAMAINSQV LTEMEIPESY IDSLPKKGRA
301: SLGDMIYRMI TLEMFDAEQF LLEMDLSSEH KILDLKNKFE ASVVIWQRKI VQIDNKSSSP WSTNLSMDKR QQLEERAATI LQLIKQEFPG ISQSTLDISK
401: IQFNRDIGLA IVESYSRILE SLAHTVMSRI EDVLEADQLT QNPELAMCKI HIVKETESPE KEEEPNFCLL EDRPKKQKPT ISLSEVMQWN IETNEPRKEK
501: SDKKLLTRVS SMIMSNNKKT TYLESLGTTR SPTAGRYS
Arabidopsis Description
ATROPGEF13RHO guanyl-nucleotide exchange factor 13 [Source:TAIR;Acc:AT3G16130]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.