Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra027189.1-P | Field mustard | nucleus | 97.74 | 98.11 |
CDY30136 | Canola | nucleus | 95.49 | 92.36 |
AT3G16130.1 | Thale cress | nucleus | 76.88 | 76.02 |
CDY28381 | Canola | nucleus | 79.89 | 70.95 |
CDY20181 | Canola | nucleus | 79.51 | 69.69 |
CDY45633 | Canola | nucleus | 61.28 | 62.33 |
CDX87879 | Canola | nucleus | 61.65 | 58.89 |
CDX67930 | Canola | nucleus | 51.69 | 56.47 |
CDY67259 | Canola | nucleus | 62.78 | 55.57 |
CDY52982 | Canola | nucleus | 62.41 | 55.24 |
Zm00001d012691_P001 | Maize | cytosol, extracellular, mitochondrion, plastid | 28.2 | 52.26 |
CDX79407 | Canola | cytosol, endoplasmic reticulum, nucleus | 51.5 | 51.02 |
CDY03296 | Canola | nucleus | 31.39 | 50.45 |
TraesCS3D01G296400.1 | Wheat | cytosol | 43.8 | 50.43 |
CDY46477 | Canola | nucleus | 49.25 | 50.29 |
CDX77402 | Canola | nucleus | 48.87 | 49.9 |
TraesCS3B01G331000.1 | Wheat | nucleus | 43.42 | 49.68 |
HORVU3Hr1G073200.1 | Barley | nucleus | 43.98 | 49.16 |
CDY03297 | Canola | mitochondrion | 48.31 | 49.14 |
CDY39783 | Canola | mitochondrion | 48.31 | 48.95 |
TraesCS3A01G305500.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 43.05 | 48.72 |
Zm00001d043383_P001 | Maize | nucleus | 46.43 | 47.23 |
OQU87589 | Sorghum | nucleus | 45.86 | 47.2 |
CDY44926 | Canola | nucleus | 43.23 | 46.56 |
TraesCS3B01G304200.1 | Wheat | plastid | 44.92 | 46.32 |
Os01t0760300-01 | Rice | plasma membrane | 45.3 | 46.26 |
CDY42277 | Canola | nucleus | 42.86 | 46.15 |
TraesCS3D01G270200.1 | Wheat | plastid | 44.74 | 45.95 |
CDY58963 | Canola | cytosol | 31.95 | 45.7 |
CDX88884 | Canola | cytosol, plastid | 41.73 | 45.49 |
Zm00001d038989_P002 | Maize | nucleus, plastid | 43.61 | 45.49 |
CDX92519 | Canola | plastid | 42.29 | 45.27 |
EES19937 | Sorghum | mitochondrion | 45.86 | 44.36 |
Os01t0675000-01 | Rice | mitochondrion | 45.86 | 44.04 |
CDX70882 | Canola | cytosol | 41.73 | 43.96 |
Os05t0560100-01 | Rice | mitochondrion | 46.8 | 43.76 |
TraesCS1A01G392100.1 | Wheat | plastid | 45.86 | 43.49 |
TraesCS1D01G400200.2 | Wheat | plastid | 45.86 | 43.19 |
TraesCS1B01G420200.1 | Wheat | nucleus, plastid | 45.49 | 42.83 |
KXG33101 | Sorghum | mitochondrion | 44.92 | 42.75 |
Zm00001d009549_P002 | Maize | mitochondrion | 43.8 | 42.21 |
CDY57376 | Canola | cytosol, extracellular, nucleus | 5.83 | 41.33 |
Zm00001d043889_P001 | Maize | mitochondrion | 44.36 | 39.01 |
TraesCS3A01G270400.1 | Wheat | plastid | 45.68 | 38.63 |
HORVU3Hr1G062030.1 | Barley | nucleus, plastid | 44.74 | 38.33 |
CDX74772 | Canola | nucleus, plastid | 31.95 | 37.78 |
CDY18892 | Canola | nucleus | 31.95 | 37.61 |
CDX93028 | Canola | nucleus | 33.46 | 37.55 |
CDY69871 | Canola | cytosol | 7.89 | 37.5 |
CDY51157 | Canola | nucleus | 31.58 | 36.92 |
CDY07216 | Canola | cytosol | 32.89 | 36.84 |
CDY70620 | Canola | nucleus | 32.33 | 36.67 |
CDY40325 | Canola | nucleus | 37.78 | 35.89 |
CDY10476 | Canola | nucleus | 37.78 | 35.89 |
HORVU1Hr1G086590.2 | Barley | plastid | 45.11 | 35.61 |
CDX77457 | Canola | cytosol | 36.28 | 35.28 |
CDX85176 | Canola | cytosol | 35.9 | 34.92 |
CDY41197 | Canola | cytosol, plastid | 34.4 | 33.03 |
CDY40246 | Canola | cytosol, plastid | 34.4 | 32.85 |
CDX70109 | Canola | cytosol | 37.41 | 31.44 |
CDY31706 | Canola | cytosol | 29.7 | 31.41 |
CDX84189 | Canola | cytosol | 28.95 | 31.36 |
CDX98888 | Canola | cytosol | 36.65 | 30.56 |
CDY62299 | Canola | cytosol, nucleus, plastid | 31.77 | 30.18 |
CDY12303 | Canola | nucleus | 31.39 | 29.66 |
CDY12411 | Canola | cytosol | 6.95 | 28.68 |
CDX91908 | Canola | cytosol | 32.33 | 26.26 |
Protein Annotations
EnsemblPlants:CDX97723 | EnsemblPlantsGene:GSBRNA2T00104978001 | Gene3D:1.20.58.1310 | Gene3D:1.20.58.2010 | GO:A0A078EED6 | GO:GO:0003674 |
GO:GO:0005089 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR005512 | InterPro:PRONE_dom | InterPro:RopGEF |
PANTHER:PTHR33101 | PANTHER:PTHR33101:SF10 | PFAM:PF03759 | PFscan:PS51334 | ProteinID:CDX97723 | ProteinID:CDX97723.1 |
UniParc:UPI0004EDF7FC | MapMan:27.4.3.1 | : | : | : | : |
Description
BnaA05g23560D
Coordinates
chrLK031900:+:1198243..1200369
Molecular Weight (calculated)
60662.3 Da
IEP (calculated)
5.680
GRAVY (calculated)
-0.594
Length
532 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMVKAVERE DKESHKFGLY DFENMKEKNA SSRNVKRWNS SSALRTEDPD IDDDTVFKRT AVSSFLPMLP IRPPQTCEAT EREQMKERFA KLLLGEDMSG
101: GGKGVSSALA LSNAVTNLSA SAFGEQRRLE PMSEDRKERW RREMGWLLSV TDHIVEFSPT QQTNKDGSSI EVMTTRQRTD LVSNIPALKN LDVMLTDCLD
201: KFKDQDEFYY VTSDSPEHLN SNSSRNNDKW WLPTVKVPPN GLSETSKRFL LSQKECVSQV LKSALAINAE VLSQMETPES YIDSLPKNGK ASLGDMIYRM
301: ITLDMFDVEK FLLEMDLSSE HKILDLQDKI EASVVIWKRK IVQKDNNKSS SPFSTNLSME KRQLLEERAE TILLLIKLRF PGISQSSLDI SKIQFNKDIG
401: LAIMESYSRV IESLAHTVLS RIEDVLVADQ LTQDPESLLC KRYIVKETES PKKEEERNFC LLEERPIKQK ATISLSEVMQ WNMDDKNDAP LKDSGKKLLT
501: RVSTMIMANN KKSTSYLESH GTTRSPRAGQ YS
101: GGKGVSSALA LSNAVTNLSA SAFGEQRRLE PMSEDRKERW RREMGWLLSV TDHIVEFSPT QQTNKDGSSI EVMTTRQRTD LVSNIPALKN LDVMLTDCLD
201: KFKDQDEFYY VTSDSPEHLN SNSSRNNDKW WLPTVKVPPN GLSETSKRFL LSQKECVSQV LKSALAINAE VLSQMETPES YIDSLPKNGK ASLGDMIYRM
301: ITLDMFDVEK FLLEMDLSSE HKILDLQDKI EASVVIWKRK IVQKDNNKSS SPFSTNLSME KRQLLEERAE TILLLIKLRF PGISQSSLDI SKIQFNKDIG
401: LAIMESYSRV IESLAHTVLS RIEDVLVADQ LTQDPESLLC KRYIVKETES PKKEEERNFC LLEERPIKQK ATISLSEVMQ WNMDDKNDAP LKDSGKKLLT
501: RVSTMIMANN KKSTSYLESH GTTRSPRAGQ YS
001: MVKASEKEHE KYKPKLFDLE NVKKKNSSSR HFKRWNSDSA LRIEDPDIDD GTVFKKTATS SIQPILPVLA MDEQPQPREA TDEESQKDSE LEQMKDKFAK
101: LLLGEDMSGG SKGVSSALAL SNAITNLAAS AFGEIRRLEA ISEDKKERWR REIGWLLSVT DHIVEFSPTH QTNEDGSSME VMTTKQRTDL VSNIPSLKKL
201: DEMLLDCLDK FKDQDEFYYV TPGSPESENS NSTRNDDKWW LPIVKVPPKG LSETLKRFLL SQRECVCQVL NSAMAINSQV LTEMEIPESY IDSLPKKGRA
301: SLGDMIYRMI TLEMFDAEQF LLEMDLSSEH KILDLKNKFE ASVVIWQRKI VQIDNKSSSP WSTNLSMDKR QQLEERAATI LQLIKQEFPG ISQSTLDISK
401: IQFNRDIGLA IVESYSRILE SLAHTVMSRI EDVLEADQLT QNPELAMCKI HIVKETESPE KEEEPNFCLL EDRPKKQKPT ISLSEVMQWN IETNEPRKEK
501: SDKKLLTRVS SMIMSNNKKT TYLESLGTTR SPTAGRYS
101: LLLGEDMSGG SKGVSSALAL SNAITNLAAS AFGEIRRLEA ISEDKKERWR REIGWLLSVT DHIVEFSPTH QTNEDGSSME VMTTKQRTDL VSNIPSLKKL
201: DEMLLDCLDK FKDQDEFYYV TPGSPESENS NSTRNDDKWW LPIVKVPPKG LSETLKRFLL SQRECVCQVL NSAMAINSQV LTEMEIPESY IDSLPKKGRA
301: SLGDMIYRMI TLEMFDAEQF LLEMDLSSEH KILDLKNKFE ASVVIWQRKI VQIDNKSSSP WSTNLSMDKR QQLEERAATI LQLIKQEFPG ISQSTLDISK
401: IQFNRDIGLA IVESYSRILE SLAHTVMSRI EDVLEADQLT QNPELAMCKI HIVKETESPE KEEEPNFCLL EDRPKKQKPT ISLSEVMQWN IETNEPRKEK
501: SDKKLLTRVS SMIMSNNKKT TYLESLGTTR SPTAGRYS
Arabidopsis Description
ATROPGEF13RHO guanyl-nucleotide exchange factor 13 [Source:TAIR;Acc:AT3G16130]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.