Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plastid 2
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G45890.1 | CDY00332 | AT5G62880.1 | 22500990 |
| AT2G45890.1 | CDY30738 | AT5G62880.1 | 22500990 |
| AT2G45890.1 | CDY45748 | AT5G62880.1 | 22500990 |
| AT2G45890.1 | CDY56740 | AT5G62880.1 | 22500990 |
| AT2G45890.1 | CDY68200 | AT5G62880.1 | 22500990 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74772 | Canola | nucleus, plastid | 95.35 | 95.78 |
| Bra004945.1-P | Field mustard | nucleus, plastid | 95.35 | 93.7 |
| AT2G45890.1 | Thale cress | nucleus, plastid | 90.27 | 88.12 |
| CDY70620 | Canola | nucleus | 58.19 | 56.08 |
| CDY51157 | Canola | nucleus | 56.42 | 56.04 |
| CDY07216 | Canola | cytosol | 58.85 | 56.0 |
| GSMUA_Achr5P20570_001 | Banana | nucleus | 54.42 | 51.04 |
| VIT_15s0046g02530.t01 | Wine grape | plastid | 56.42 | 50.6 |
| Os10t0550300-00 | Rice | plastid | 51.11 | 48.23 |
| Os04t0559100-00 | Rice | cytosol | 19.25 | 47.8 |
| Zm00001d002696_P001 | Maize | cytosol | 48.67 | 47.62 |
| EES11256 | Sorghum | nucleus | 49.34 | 47.35 |
| TraesCS2B01G426300.1 | Wheat | cytosol | 48.67 | 47.31 |
| EER91970 | Sorghum | plastid | 50.66 | 46.83 |
| Zm00001d029850_P001 | Maize | nucleus, plastid | 50.44 | 46.63 |
| TraesCS2D01G405400.1 | Wheat | nucleus | 48.45 | 46.6 |
| TraesCS2A01G408100.1 | Wheat | cytosol | 48.23 | 46.58 |
| Os07t0481100-01 | Rice | cytosol | 47.12 | 46.3 |
| TraesCS1B01G222700.1 | Wheat | plastid | 48.67 | 46.03 |
| TraesCS1D01G211900.1 | Wheat | nucleus | 48.45 | 45.91 |
| TraesCS1A01G208700.1 | Wheat | nucleus | 48.23 | 45.7 |
| TraesCS6A01G405000.1 | Wheat | nucleus | 46.02 | 45.51 |
| HORVU1Hr1G053350.4 | Barley | nucleus, plastid | 47.79 | 45.19 |
| EER99384 | Sorghum | nucleus, plastid | 46.24 | 45.14 |
| HORVU6Hr1G092860.2 | Barley | nucleus | 45.58 | 45.08 |
| Zm00001d021489_P001 | Maize | nucleus, plastid | 46.24 | 45.04 |
| TraesCS6D01G388300.1 | Wheat | nucleus | 46.24 | 44.75 |
| CDY69871 | Canola | cytosol | 11.06 | 44.64 |
| CDY57376 | Canola | cytosol, extracellular, nucleus | 7.3 | 44.0 |
| TraesCS6B01G449200.1 | Wheat | nucleus | 45.58 | 43.74 |
| HORVU2Hr1G096430.13 | Barley | mitochondrion | 47.79 | 40.68 |
| CDX91908 | Canola | cytosol | 58.63 | 40.46 |
| CDX77457 | Canola | cytosol | 46.46 | 38.39 |
| CDX85176 | Canola | cytosol | 46.02 | 38.03 |
| CDY40325 | Canola | nucleus | 45.58 | 36.79 |
| CDY10476 | Canola | nucleus | 45.35 | 36.61 |
| CDX67930 | Canola | nucleus | 38.72 | 35.93 |
| CDY03296 | Canola | nucleus | 25.89 | 35.35 |
| CDY46477 | Canola | nucleus | 40.49 | 35.12 |
| CDX77402 | Canola | nucleus | 40.49 | 35.12 |
| CDY41197 | Canola | cytosol, plastid | 42.26 | 34.48 |
| CDY03297 | Canola | mitochondrion | 39.82 | 34.42 |
| CDY40246 | Canola | cytosol, plastid | 42.26 | 34.29 |
| CDY39783 | Canola | mitochondrion | 39.82 | 34.29 |
| CDY45633 | Canola | nucleus | 39.6 | 34.23 |
| CDX88884 | Canola | cytosol, plastid | 36.95 | 34.22 |
| CDY12411 | Canola | cytosol | 9.73 | 34.11 |
| CDY44926 | Canola | nucleus | 37.17 | 34.01 |
| CDY42277 | Canola | nucleus | 37.17 | 34.01 |
| CDX70882 | Canola | cytosol | 37.39 | 33.47 |
| CDX92519 | Canola | plastid | 36.73 | 33.4 |
| CDY58963 | Canola | cytosol | 27.43 | 33.33 |
| CDX79407 | Canola | cytosol, endoplasmic reticulum, nucleus | 39.16 | 32.96 |
| CDX70109 | Canola | cytosol | 45.35 | 32.39 |
| CDX87879 | Canola | nucleus | 39.82 | 32.32 |
| CDX98888 | Canola | cytosol | 45.13 | 31.97 |
| CDX97723 | Canola | nucleus | 37.61 | 31.95 |
| CDY30136 | Canola | nucleus | 37.61 | 30.91 |
| CDX84189 | Canola | cytosol | 32.08 | 29.53 |
| CDY67259 | Canola | nucleus | 38.27 | 28.79 |
| CDY31706 | Canola | cytosol | 31.86 | 28.63 |
| CDY52982 | Canola | nucleus | 38.05 | 28.62 |
| CDY28381 | Canola | nucleus | 37.39 | 28.21 |
| CDY62299 | Canola | cytosol, nucleus, plastid | 34.29 | 27.68 |
| CDY20181 | Canola | nucleus | 37.17 | 27.68 |
| CDY12303 | Canola | nucleus | 33.85 | 27.18 |
| CDX93028 | Canola | nucleus | 25.89 | 24.68 |
Protein Annotations
| Gene3D:1.20.58.2010 | MapMan:27.4.3.1 | GO:A0A078G1N6 | UniProt:A0A078G1N6 | EnsemblPlants:CDY18892 | ProteinID:CDY18892 |
| ProteinID:CDY18892.1 | GO:GO:0003674 | GO:GO:0005085 | GO:GO:0005089 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0008150 | GO:GO:0065009 | EnsemblPlantsGene:GSBRNA2T00006082001 | InterPro:IPR005512 | PFAM:PF03759 | InterPro:PRONE_dom |
| PFscan:PS51334 | PANTHER:PTHR33101 | PANTHER:PTHR33101:SF9 | InterPro:RopGEF | UniParc:UPI0004EEED83 | SEG:seg |
Description
BnaC04g04580DBnaC04g04580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1N6]
Coordinates
chrLK032090:-:167519..169917
Molecular Weight (calculated)
51112.4 Da
IEP (calculated)
5.069
GRAVY (calculated)
-0.431
Length
452 amino acids
Sequence
(BLAST)
(BLAST)
001: MESSPSSDQN EVSASETPTS SVSSPYRRTY SDISGLSHRF DVQSFYNRPS NTNAVVHEED LSEDAVEPKD NVNSLENFYH SVSFRLIQVF VSAELEMMRE
101: RFAKLLLGED MSGSGKGVCT AVTVSNSITN LYATVFGQSL RLQPLSTEKK DLWKREMNCF MSICDYIVEV VPRSLGNNVE ITETKLRSDI LMNLPALRKL
201: DNMLMDILDG FTENEFWYVE RGSSSMNSNN VVVQRKDEKW WLPVPCVPAE GLSENERKNL RHKRDCANQI HKAALAINDS TLNDMDIPDS YLTTLPKSGK
301: ASVGDVIYKQ LCTAEKFYPD QLLDILKISS EHEALELADK VEASLVTWRR KTGGLAHSKS SWDMMKDMGG DAGNDKNHIL AARARSLLFC LKQRFPELSQ
401: TSLDICKIQY NRDVGKAVLE SYSRVLEGLA YNVVSWIDDV LYVDRTVRNR DD
101: RFAKLLLGED MSGSGKGVCT AVTVSNSITN LYATVFGQSL RLQPLSTEKK DLWKREMNCF MSICDYIVEV VPRSLGNNVE ITETKLRSDI LMNLPALRKL
201: DNMLMDILDG FTENEFWYVE RGSSSMNSNN VVVQRKDEKW WLPVPCVPAE GLSENERKNL RHKRDCANQI HKAALAINDS TLNDMDIPDS YLTTLPKSGK
301: ASVGDVIYKQ LCTAEKFYPD QLLDILKISS EHEALELADK VEASLVTWRR KTGGLAHSKS SWDMMKDMGG DAGNDKNHIL AARARSLLFC LKQRFPELSQ
401: TSLDICKIQY NRDVGKAVLE SYSRVLEGLA YNVVSWIDDV LYVDRTVRNR DD
001: MESSSNSDQN EGTPTSSVSS PYRRTYSDIS GLSHRFDVQS FYNRPSNTNA VVLSGHEEDV SEDAEEPKDD VVNDVHGDGD EEDSDIDSAE DAELEMMRER
101: FAKLLLGEDM SGSGKGVCTA VTVSNSITNL YATVFGQSLR LQPLSTEKKD LWKREMNCFM SICDYIVEVI PRSLGTNVEI TETKLRSDIL MSLPALRKLD
201: NMLMEILDSF TENEFWYVER GSSSMNSGGG GRDSGTFRKV VVQRKDEKWW LPVPCVPAEG LSEEERKHLR HKRDCASQIH KAALAINDST LNDMDIPDSY
301: LTTLPKSGKA SVGDVIYKQL CTAEKFYPDQ LLDILKITSE HEALELADKV EASLVTWRRK TGGLTHSKSS WDMMKDISGD ADRGNDKNHI LAARARSLLF
401: CLKQRYPELS QTSLDICKIQ FNRDVGKAVL ESYSRVLEGL AYNVVSWIDD VLYVDRTVRN RDD
101: FAKLLLGEDM SGSGKGVCTA VTVSNSITNL YATVFGQSLR LQPLSTEKKD LWKREMNCFM SICDYIVEVI PRSLGTNVEI TETKLRSDIL MSLPALRKLD
201: NMLMEILDSF TENEFWYVER GSSSMNSGGG GRDSGTFRKV VVQRKDEKWW LPVPCVPAEG LSEEERKHLR HKRDCASQIH KAALAINDST LNDMDIPDSY
301: LTTLPKSGKA SVGDVIYKQL CTAEKFYPDQ LLDILKITSE HEALELADKV EASLVTWRRK TGGLTHSKSS WDMMKDISGD ADRGNDKNHI LAARARSLLF
401: CLKQRYPELS QTSLDICKIQ FNRDVGKAVL ESYSRVLEGL AYNVVSWIDD VLYVDRTVRN RDD
Arabidopsis Description
ROPGEF4Rop guanine nucleotide exchange factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q0WNP7]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.