Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- cytosol 1
- plastid 3
- nucleus 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G211900.1 | Wheat | nucleus | 99.16 | 99.37 |
| TraesCS1A01G208700.1 | Wheat | nucleus | 97.91 | 98.11 |
| HORVU1Hr1G053350.4 | Barley | nucleus, plastid | 97.07 | 97.07 |
| Os10t0550300-00 | Rice | plastid | 80.13 | 79.96 |
| EER91970 | Sorghum | plastid | 78.24 | 76.48 |
| Zm00001d029850_P001 | Maize | nucleus, plastid | 77.62 | 75.87 |
| KRH15734 | Soybean | cytosol | 32.01 | 58.85 |
| TraesCS2B01G426300.1 | Wheat | cytosol | 56.9 | 58.49 |
| GSMUA_Achr5P20570_001 | Banana | nucleus | 56.69 | 56.22 |
| CDY57376 | Canola | cytosol, extracellular, nucleus | 8.79 | 56.0 |
| PGSC0003DMT400000136 | Potato | nucleus | 54.81 | 54.93 |
| KRH65102 | Soybean | nucleus | 55.23 | 54.89 |
| Solyc01g094610.2.1 | Tomato | nucleus | 54.6 | 54.72 |
| KRH48179 | Soybean | nucleus | 42.05 | 53.6 |
| TraesCS6B01G449200.1 | Wheat | nucleus | 52.09 | 52.87 |
| CDY70620 | Canola | nucleus | 51.67 | 52.67 |
| AT4G00460.2 | Thale cress | nucleus | 51.88 | 52.43 |
| Bra000971.1-P | Field mustard | nucleus | 52.3 | 52.3 |
| CDY07216 | Canola | cytosol | 51.88 | 52.21 |
| CDY51157 | Canola | nucleus | 49.58 | 52.09 |
| VIT_15s0046g02530.t01 | Wine grape | plastid | 54.6 | 51.79 |
| Bra037342.1-P | Field mustard | cytosol | 51.26 | 51.36 |
| KRG94270 | Soybean | mitochondrion | 11.92 | 51.35 |
| CDX74772 | Canola | nucleus, plastid | 46.44 | 49.33 |
| KRH00737 | Soybean | nucleus, plastid | 52.72 | 49.22 |
| Bra004945.1-P | Field mustard | nucleus, plastid | 47.07 | 48.91 |
| KRH40457 | Soybean | cytosol | 52.3 | 48.83 |
| AT1G01700.4 | Thale cress | nucleus | 52.51 | 48.74 |
| CDY18892 | Canola | nucleus | 46.03 | 48.67 |
| AT2G45890.1 | Thale cress | nucleus, plastid | 47.07 | 48.6 |
| TraesCS5B01G339200.1 | Wheat | cytosol | 42.47 | 42.03 |
| TraesCS3B01G396500.1 | Wheat | cytosol | 45.61 | 40.45 |
| TraesCS1B01G289900.1 | Wheat | cytosol | 45.61 | 38.52 |
| CDX91908 | Canola | cytosol | 52.09 | 38.02 |
| TraesCS3B01G331000.1 | Wheat | nucleus | 35.15 | 36.13 |
| TraesCS3B01G304200.1 | Wheat | plastid | 37.87 | 35.08 |
| TraesCS1B01G420200.1 | Wheat | nucleus, plastid | 36.61 | 30.97 |
| TraesCS6B01G298000.1 | Wheat | cytosol | 33.68 | 29.65 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G222700.1 | EnsemblPlantsGene:TraesCS1B01G222700 | Gene3D:1.20.58.2010 | GO:GO:0003674 | GO:GO:0005089 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR005512 | InterPro:PRONE_dom | InterPro:RopGEF | PANTHER:PTHR33101 | PANTHER:PTHR33101:SF9 |
| PFAM:PF03759 | PFscan:PS51334 | SEG:seg | MapMan:27.4.3.1 | : | : |
Description
No Description!
Coordinates
chr1B:-:400312591..400314224
Molecular Weight (calculated)
51724.9 Da
IEP (calculated)
5.980
GRAVY (calculated)
-0.258
Length
478 amino acids
Sequence
(BLAST)
(BLAST)
001: MADSSSSPSV SLSDESSEAE AQCCSSSSTA PSLHDTVDFS RTASDVSTFS ERSVDHSGPF GTAAVSKLIG GRGSPAAALS RLSMKPRADV LDRRSAEDEL
101: DLVKERFSKL LLGEDMSGGG KGVCTAVAIS NAITNLYATV FGNCHKLEPL PAGKKTMWRR EMDCLLAVCD YIVEFYPSTQ PLSDGTRVEV MATRPRSDIY
201: INLPALEKLD AMLIEIMDSF QKAEFWYADA GTRSFGSVTS SSSPSSSFRR STTTTTQRNE EKWWVPVPCV PEGGLSVKAR KELRQRRDCA NQIHKAAVAI
301: NSGVLSDMEV PESFMALLPK SGKASVGDAV YRAMHSSDKF SPDYLLDCVD VSSEHEALAL ADRVEAAMYV WRRKATASHG VGRSAQWSRV KELAAAADDG
401: GEGGKNVALA GRAESLLLCI KNRFPGLSQT TLDTSKIQFN KDVGQAILES YSRVLESLAF NIVSWTDEVL FADKAARK
101: DLVKERFSKL LLGEDMSGGG KGVCTAVAIS NAITNLYATV FGNCHKLEPL PAGKKTMWRR EMDCLLAVCD YIVEFYPSTQ PLSDGTRVEV MATRPRSDIY
201: INLPALEKLD AMLIEIMDSF QKAEFWYADA GTRSFGSVTS SSSPSSSFRR STTTTTQRNE EKWWVPVPCV PEGGLSVKAR KELRQRRDCA NQIHKAAVAI
301: NSGVLSDMEV PESFMALLPK SGKASVGDAV YRAMHSSDKF SPDYLLDCVD VSSEHEALAL ADRVEAAMYV WRRKATASHG VGRSAQWSRV KELAAAADDG
401: GEGGKNVALA GRAESLLLCI KNRFPGLSQT TLDTSKIQFN KDVGQAILES YSRVLESLAF NIVSWTDEVL FADKAARK
001: MENLSNPDEN DDHQSPRSID QNDQSAVETP VYSTMSIDSF VYPRTCSETT SGFSDQIDET NSFCSEASPC NWPVLTESKS SKCLSGLEMQ SNECLVVQEI
101: SEPELETMKE RFAKLLLGED MSGSGKGVCT AVTISNAITN LYATVFGQNL RLEPLETEKR ALWKREMNCL LSVCDYIVEF IPRCQNLSNG ATVEVMESRP
201: RADIYINLPA LRKLDSMLME ALDSFQNTEF WYAEEGSLSM KSARSSTGSF RKVIVQRKEE KWWLPVPLVP SEGLSDKARK QLKNKRESTN QIHKAAMAIN
301: SSILSEMEIP DSYMTTLPKC GKSSVGDSIY RYMSGSGRFF PEQLLDCLNI SSEHEAVQLA DRVEASMYTW RRKSCLSNSK NSWNMVKDLM STTERTDKNY
401: VMAERAETLL FCLKQRYPEL SQTSLDICKI QYNKDVGKAV LESYSRVLEG LAFNIVAWID DVLYVDKTMR GSE
101: SEPELETMKE RFAKLLLGED MSGSGKGVCT AVTISNAITN LYATVFGQNL RLEPLETEKR ALWKREMNCL LSVCDYIVEF IPRCQNLSNG ATVEVMESRP
201: RADIYINLPA LRKLDSMLME ALDSFQNTEF WYAEEGSLSM KSARSSTGSF RKVIVQRKEE KWWLPVPLVP SEGLSDKARK QLKNKRESTN QIHKAAMAIN
301: SSILSEMEIP DSYMTTLPKC GKSSVGDSIY RYMSGSGRFF PEQLLDCLNI SSEHEAVQLA DRVEASMYTW RRKSCLSNSK NSWNMVKDLM STTERTDKNY
401: VMAERAETLL FCLKQRYPEL SQTSLDICKI QYNKDVGKAV LESYSRVLEG LAFNIVAWID DVLYVDKTMR GSE
Arabidopsis Description
ROPGEF3Rop guanine nucleotide exchange factor 3 [Source:UniProtKB/Swiss-Prot;Acc:A4IJ27]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.