Factsheet for Bra000971.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70620	Canola	nucleus	97.7	99.57
AT4G00460.2	Thale cress	nucleus	93.93	94.93
Bra037342.1-P	Field mustard	cytosol	92.05	92.24
CDX91908	Canola	cytosol	97.91	71.45
KRH65102	Soybean	nucleus	65.69	65.28
Solyc01g094610.2.1	Tomato	nucleus	63.18	63.31
PGSC0003DMT400000136	Potato	nucleus	62.76	62.89
KRH48179	Soybean	nucleus	47.91	61.07
KRH15734	Soybean	cytosol	33.05	60.77
VIT_15s0046g02530.t01	Wine grape	plastid	62.76	59.52
KRH00737	Soybean	nucleus, plastid	63.18	58.98
Bra004945.1-P	Field mustard	nucleus, plastid	56.28	58.48
KRH40457	Soybean	cytosol	61.92	57.81
GSMUA_Achr5P20570_001	Banana	nucleus	55.02	54.56
EES11256	Sorghum	nucleus	52.72	53.5
Zm00001d002696_P001	Maize	cytosol	51.46	53.25
Os10t0550300-00	Rice	plastid	53.35	53.24
KRG94270	Soybean	mitochondrion	12.34	53.15
TraesCS1A01G208700.1	Wheat	nucleus	52.3	52.41
TraesCS1D01G211900.1	Wheat	nucleus	52.3	52.41
TraesCS1B01G222700.1	Wheat	plastid	52.3	52.3
HORVU1Hr1G053350.4	Barley	nucleus, plastid	51.88	51.88
TraesCS2B01G426300.1	Wheat	cytosol	50.42	51.83
TraesCS2A01G408100.1	Wheat	cytosol	50.21	51.28
TraesCS2D01G405400.1	Wheat	nucleus	50.21	51.06
EER91970	Sorghum	plastid	52.09	50.92
Zm00001d029850_P001	Maize	nucleus, plastid	51.67	50.51
Os07t0481100-01	Rice	cytosol	48.54	50.43
Zm00001d021489_P001	Maize	nucleus, plastid	48.95	50.43
EER99384	Sorghum	nucleus, plastid	48.12	49.68
TraesCS6A01G405000.1	Wheat	nucleus	47.28	49.45
HORVU6Hr1G092860.2	Barley	nucleus	47.07	49.23
Os04t0559100-00	Rice	cytosol	18.62	48.9
TraesCS6D01G388300.1	Wheat	nucleus	47.49	48.61
TraesCS6B01G449200.1	Wheat	nucleus	47.07	47.77
HORVU2Hr1G096430.13	Barley	mitochondrion	50.0	45.01
Bra009621.1-P	Field mustard	nucleus	49.16	41.96
Bra015010.1-P	Field mustard	cytosol	45.4	39.67
Bra009152.1-P	Field mustard	cytosol, plastid	47.49	38.15
Bra007183.1-P	Field mustard	cytosol, plastid	43.93	36.78
Bra036671.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	37.87	35.84
Bra021162.1-P	Field mustard	nucleus	32.43	35.71
Bra003536.1-P	Field mustard	nucleus	38.08	35.48
Bra013249.1-P	Field mustard	nucleus, plastid	38.08	35.14
Bra015068.1-P	Field mustard	nucleus	38.28	35.12
Bra030396.1-P	Field mustard	nucleus	38.49	34.26
Bra006510.1-P	Field mustard	cytosol	34.94	34.22
Bra020048.1-P	Field mustard	nucleus	34.94	33.81
Bra018956.1-P	Field mustard	nucleus	37.24	33.21
Bra027189.1-P	Field mustard	nucleus	35.98	32.45
Bra002246.1-P	Field mustard	plastid	34.1	31.53
Bra005323.1-P	Field mustard	nucleus	32.64	31.14
Bra005322.1-P	Field mustard	nucleus	20.71	25.26
Bra021161.1-P	Field mustard	nucleus	1.67	6.02

Protein Annotations

EnsemblPlants:Bra000971.1	EnsemblPlants:Bra000971.1-P	EnsemblPlantsGene:Bra000971	Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	GO:GO:0003674
GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009
InterPro:IPR005512	InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101	PANTHER:PTHR33101:SF9	PFAM:PF03759
PFscan:PS51334	UniParc:UPI0002540777	UniProt:M4C9U2	MapMan:27.4.3.1	:	:

Description

AT4G00460 (E=8e-258) ATROPGEF3, ROPGEF3 | Rho guanyl-nucleotide exchange factor

Coordinates

chrA03:+:14185129..14186999

Molecular Weight (calculated)

53902.7 Da

IEP (calculated)

4.706

GRAVY (calculated)

-0.449

Length

478 amino acids

Sequence
(BLAST)

001: MENLSNPDEN EDASYHQSPR SIDQNDQSAS ETPVYSSMSI DSFVYPRTCS ESTSGFSDQI DHETNSFCSD ASPSDWPVLT ESKSSKCLST GLDMQSNENL
101: QVQEISEAEL ETMKERFSKL LLGEDMSGSG KGVCTAVTIS NAITNLYATV FGQNLRLEPL ETEKRALWKR EMKCLLSVCD YIVEFIPRCQ SLSNGTTVEV
201: MESRPRADIY INLPALRKLD SMLMEALDSF QNTEFWYAEE GSLSMKSARS ATGSFRKVIV QRKEEKWWLP VPLVPPEGLS DIARKQLKNK RESTNQIHKA
301: AMAINSSILS EMEIPDSYMA TLPKCGKSSV GDSIYRYMSG SGRFFPEKLL DCLNIASEHE AVQLADRVEA SMYTWRRKAC LSNSKNSWNL VKDLMSTTER
401: TDKNYVMAER AETLLFCLKQ RYPELSQTSL DICKIQYNKD VGKAVLESYS RVLEGLAFNI VAWIDDVLYV DKTMSGSE

Best Arabidopsis Sequence Match ( AT4G00460.2 )
(BLAST)

001: MENLSNPDEN DDHQSPRSID QNDQSAVETP VYSTMSIDSF VYPRTCSETT SGFSDQIDET NSFCSEASPC NWPVLTESKS SKCLSGLEMQ SNECLVVQEI
101: SEPELETMKE RFAKLLLGED MSGSGKGVCT AVTISNAITN LYATVFGQNL RLEPLETEKR ALWKREMNCL LSVCDYIVEF IPRCQNLSNG ATVEVMESRP
201: RADIYINLPA LRKLDSMLME ALDSFQNTEF WYAEEGSLSM KSARSSTGSF RKVIVQRKEE KWWLPVPLVP SEGLSDKARK QLKNKRESTN QIHKAAMAIN
301: SSILSEMEIP DSYMTTLPKC GKSSVGDSIY RYMSGSGRFF PEQLLDCLNI SSEHEAVQLA DRVEASMYTW RRKSCLSNSK NSWNMVKDLM STTERTDKNY
401: VMAERAETLL FCLKQRYPEL SQTSLDICKI QYNKDVGKAV LESYSRVLEG LAFNIVAWID DVLYVDKTMR GSE

Arabidopsis Description

ROPGEF3Rop guanine nucleotide exchange factor 3 [Source:UniProtKB/Swiss-Prot;Acc:A4IJ27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.