Factsheet for Bra006510.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88884	Canola	cytosol, plastid	98.36	98.36
CDX70882	Canola	cytosol	98.16	94.85
Bra020048.1-P	Field mustard	nucleus	76.23	75.3
AT5G19560.4	Thale cress	mitochondrion	77.05	73.44
Bra002246.1-P	Field mustard	plastid	77.05	72.73
GSMUA_Achr2P09130_001	Banana	cytosol	47.34	59.08
GSMUA_Achr6P14020_001	Banana	cytosol	51.23	58.0
GSMUA_Achr5P06900_001	Banana	cytosol	49.8	57.72
TraesCS6A01G196000.1	Wheat	cytosol	51.23	57.34
GSMUA_Achr4P10530_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	50.0	56.61
OQU84790	Sorghum	cytosol	50.41	55.91
TraesCSU01G211800.1	Wheat	cytosol	35.25	52.76
Bra036671.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	54.51	52.67
Bra013249.1-P	Field mustard	nucleus, plastid	54.92	51.74
Zm00001d053307_P002	Maize	cytosol, plastid	51.02	51.55
TraesCSU01G211700.1	Wheat	cytosol	35.86	51.47
TraesCSU01G217800.1	Wheat	cytosol	35.86	51.47
Bra015068.1-P	Field mustard	nucleus	54.92	51.44
GSMUA_Achr3P03410_001	Banana	nucleus	53.07	51.19
Os02t0272300-01	Rice	plasma membrane	53.48	50.88
HORVU6Hr1G050860.4	Barley	mitochondrion	52.05	50.5
TraesCS6D01G183300.1	Wheat	mitochondrion	52.25	50.1
GSMUA_Achr3P15410_001	Banana	nucleus	49.18	48.39
VIT_11s0016g03740.t01	Wine grape	nucleus	53.69	47.21
Bra003536.1-P	Field mustard	nucleus	49.59	47.17
Bra021162.1-P	Field mustard	nucleus	41.8	47.0
Zm00001d016001_P002	Maize	mitochondrion	51.43	47.0
Bra030396.1-P	Field mustard	nucleus	50.61	46.0
Bra018956.1-P	Field mustard	nucleus	50.0	45.52
Bra027189.1-P	Field mustard	nucleus	45.49	41.89
Bra004945.1-P	Field mustard	nucleus, plastid	33.61	35.65
Bra037342.1-P	Field mustard	cytosol	34.43	35.22
Bra000971.1-P	Field mustard	nucleus	34.22	34.94
Bra015010.1-P	Field mustard	cytosol	37.5	33.46
Bra005323.1-P	Field mustard	nucleus	33.61	32.73
Bra009621.1-P	Field mustard	nucleus	36.07	31.43
Bra007183.1-P	Field mustard	cytosol, plastid	36.27	31.0
Bra009152.1-P	Field mustard	cytosol, plastid	37.7	30.92
Bra005322.1-P	Field mustard	nucleus	22.95	28.57
Bra021161.1-P	Field mustard	nucleus	1.43	5.26

Protein Annotations

EnsemblPlants:Bra006510.1	EnsemblPlants:Bra006510.1-P	EnsemblPlantsGene:Bra006510	Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	GO:GO:0003674
GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009
InterPro:IPR005512	InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101	PANTHER:PTHR33101:SF10	PFAM:PF03759
PFscan:PS51334	UniParc:UPI000253FF52	UniProt:M4CQM1	MapMan:27.4.3.1	:	:

Description

AT5G19560 (E=7e-203) ATROPGEF10, ROPGEF10 | ROPGEF10 (ROP UANINE NUCLEOTIDE EXCHANGE FACTOR 10); Rho guanyl-nucleotide exchange factor

Coordinates

chrA03:+:3845994..3848462

Molecular Weight (calculated)

56169.7 Da

IEP (calculated)

8.387

GRAVY (calculated)

-0.536

Length

488 amino acids

Sequence
(BLAST)

001: MFDGRNKGHS SFPSRRDSKQ IPEQELTIHG MNPASSSRRG KQARTSDMEM MRERFAKLLL GEDMSGGEKG VTSALALSNA ITNLADSMFG EHMKLQPMDL
101: KRKKIWRKEM NWLLSVVDHI VQFVPSKQVA KTGDFTEIMV TKKRDDLLMN IPALRKLDSV LLETLDKFKD HKDFWYVQKD VEKTENNGNW RTDENWLLPV
201: VKVPPDGLSE ESRKFLRSQK ESVAQVLKAA TAINALVLSE MHIPDNYIDF LPKKGKTSLG DLLYKSITDE YFDPGYFLSS CDLSTKHKVL DLKNRIEASM
301: VIWKRKMNHK EQWGSFVSLE KRELFEVRVE TILAMLKQKF PKILQSSLEI SKIKNNKDVG HAILESYSRV LESLAAKIMS RIEDVLEADV LVHIQLMETE
401: RRFESDAEPE YEKTEKVVLA VTPNSTKLAD LIGWRFSSDT EQSSTSDIEL FHEAEQEKEI MKSPIRVQPM KLSYLAKLEN LRSPSERH

Best Arabidopsis Sequence Match ( AT5G19560.5 )
(BLAST)

001: MFDGRNSGHS SFSSRGDGMH TPEHELAGHA APSTRRGKQN RRSDMEVMKE RFAKLLLGED MSGGGTGETS ALALSNAITK LADSMFGEQM KLQPMYPETK
101: ENWRKEMGWL LSVIDHIVQF VPSRQMGKNG QFTEIMVTKQ RDDLLTNIPA LRKLDSVLLE TLDNFKDQKD FWYVPRDMED ADHNGDWRRD ENWWLPVVKV
201: PTDGLSEESR RWLQNQKDSV AQVLKAATAI NAHVLSEMHV PENYIDSLPK NGKTSLGDFL YKSITEESFD PDYFVSFLDL STEHKVLDLK NRIEASMVIW
301: KRKMCQKEKD GKSQWGSTVS LEKRELFEVR AETILVMLKQ QFPGIPQSSL EVSKIKNNKD VGQAILESYS RVLESLASKI MSRIEDVLEA DRLVQRQLMG
401: EAETRSESEA ESEYEETEKV VAAETPNSRK LSDFIGWRLS SDTKKHSSMS DIEFFHKVEQ EKEKPMMKSP RALPKKFSYL AKLENMRSPS DRH

Arabidopsis Description

ATROPGEF10ROP uanine nucleotide exchange factor 10 [Source:TAIR;Acc:AT5G19560]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.