Factsheet for TraesCSU01G217800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G211800.1	Wheat	cytosol	95.88	100.0
TraesCSU01G211700.1	Wheat	cytosol	100.0	100.0
TraesCS6A01G196000.1	Wheat	cytosol	95.59	74.54
OQU84790	Sorghum	cytosol	86.76	67.05
TraesCS6D01G183300.1	Wheat	mitochondrion	96.18	64.24
HORVU6Hr1G050860.4	Barley	mitochondrion	95.0	64.21
Zm00001d053307_P002	Maize	cytosol, plastid	87.35	61.49
Os02t0272300-01	Rice	plasma membrane	90.29	59.84
Zm00001d016001_P002	Maize	mitochondrion	86.76	55.24
GSMUA_Achr6P14020_001	Banana	cytosol	60.88	48.03
CDY58963	Canola	cytosol	49.41	45.16
Solyc07g032730.2.1	Tomato	nucleus	52.94	44.01
Solyc06g066650.2.1	Tomato	nucleus	57.65	41.79
KRH44350	Soybean	nucleus	55.59	41.63
GSMUA_Achr3P03410_001	Banana	nucleus	61.47	41.3
PGSC0003DMT400042632	Potato	nucleus	55.88	40.6
PGSC0003DMT400006531	Potato	cytosol	56.18	38.05
Solyc12g044270.1.1	Tomato	nucleus	58.53	37.9
Solyc03g120650.2.1	Tomato	cytosol	55.88	37.85
KRH23439	Soybean	nucleus	59.12	37.64
PGSC0003DMT400040374	Potato	nucleus	51.76	37.45
KRH09881	Soybean	cytosol	58.24	37.15
CDY44926	Canola	nucleus	52.65	36.23
Bra020048.1-P	Field mustard	nucleus	52.65	36.23
CDX88884	Canola	cytosol, plastid	51.47	35.86
Bra006510.1-P	Field mustard	cytosol	51.47	35.86
CDY42277	Canola	nucleus	52.06	35.83
AT5G19560.4	Thale cress	mitochondrion	53.82	35.74
PGSC0003DMT400097197	Potato	nucleus	58.24	35.17
KRH47282	Soybean	nucleus	55.29	34.94
CDX70882	Canola	cytosol	51.76	34.85
KRH39304	Soybean	nucleus	52.65	34.42
CDX92519	Canola	plastid	50.29	34.41
PGSC0003DMT400001020	Potato	nucleus	55.59	34.05
KRH48369	Soybean	mitochondrion	56.18	33.99
Solyc12g007150.1.1	Tomato	nucleus	55.29	33.87
VIT_11s0016g03740.t01	Wine grape	nucleus	55.0	33.69
Bra002246.1-P	Field mustard	plastid	50.29	33.08

Protein Annotations

EnsemblPlants:TraesCSU01G217800.1	EnsemblPlantsGene:TraesCSU01G217800	Gene3D:1.20.58.2010	GO:GO:0003674	GO:GO:0005089	GO:GO:0005488
GO:GO:0005515	InterPro:IPR005512	InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101	PANTHER:PTHR33101:SF16
PFAM:PF03759	PFscan:PS51334	SEG:seg	MapMan:27.4.3.1	:	:

Description

No Description!

Coordinates

chrUn:-:321288215..321289327

Molecular Weight (calculated)

38753.2 Da

IEP (calculated)

4.883

GRAVY (calculated)

-0.472

Length

340 amino acids

Sequence
(BLAST)

001: MVVMHEHECL VAACMQGYMD NFVDQTEFWY EKGGDNKRDD DKWWMPTVKV PAEGLSDVTR KWLQYQKECV NQVLKAAMAI NAQVLVEMEI PEIYIESLPK
101: KGKTSLGDAI YRSITDEEFD PIEFLEGVDL STEHKVLDLK NRIEASTIIW KRKMQTKDAK SSWGSIISFE KREQFEERAE TILHLLKLQF PGAPQSQLDI
201: SKIQYNRDVG YALLESYSRV LESLAYSVIS RIEDVLGADA AATNLTASEA ARRQLEMKAP RKLDAREELE KLNEAPASMT LYDFMGWHFD QDELMRKKEE
301: GTLDEAGEAM LLKKAPSLAP KKFSYVDSLA GGVRSPSAHH

Best Arabidopsis Sequence Match ( AT1G52240.1 )
(BLAST)

001: MVKAMEQEQE TYKSRLFHFK NMNENSASRH VKSWSSDCAM RMDGSDNLDD DDNDMMMFRS QPGKCGSVDR PSLPIGGVTP NRNDKLPRVS SSDSMEALII
101: LQAAMEQMKE KFSKLLLGED MSGGGKGVSS ALALSNAITN LAASAFGEQR RLEPMAVDRK TRWRREIGWL ISVADYIVEF APTQQTNKDG TSMEVMSTRQ
201: RTDLLCNIPA LKKLDAMLLD CLDKFKDQDE FYYVKKDSPD SCETRNDEKW WLPAVKVPPN GLSEISRRFL QSQKECVNQV LKAAMAINAQ VLSEMEIPES
301: YLESLPKNGR ASLGDVIYRM ITVEMFDADQ FLIEMDLSSE HKILDLKNRI EASIVIWKRK MVQKDTKSPW GSTVSIEKRE QFEERAETIL LLLKQGFPGI
401: SQSSLDISKI QFNRDVGLAI LESYSRVLES LAHTVMSRIE DVLYADQLTQ EPTNNAPSKN RYSLKENEKL REERLSFTED MASGTLSDVM QWGNKNNEMK
501: KESFFGDREK PLLSKVTGIM TNNKKSSYLD NLGAMRSPTA RYS

Arabidopsis Description

ROPGEF11ROPGEF11 [Source:UniProtKB/TrEMBL;Acc:A0A178W8V0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.