Factsheet for Solyc07g032730.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g114070.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24620.1	Solyc03g114070.2.1	AT5G62880.1	22500990
AT4G13240.1	Solyc03g114070.2.1	AT5G62880.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040374	Potato	nucleus	89.0	77.45
GSMUA_Achr5P06900_001	Banana	cytosol	68.7	66.75
GSMUA_Achr2P09130_001	Banana	cytosol	61.86	64.71
GSMUA_Achr6P14020_001	Banana	cytosol	66.5	63.11
GSMUA_Achr4P10530_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	66.5	63.11
VIT_09s0002g04310.t01	Wine grape	cytosol	67.97	61.23
TraesCS6A01G196000.1	Wheat	cytosol	62.35	58.49
OQU84790	Sorghum	cytosol	62.59	58.18
Solyc12g007150.1.1	Tomato	nucleus	77.26	56.94
Solyc06g066650.2.1	Tomato	nucleus	64.79	56.5
GSMUA_Achr3P15410_001	Banana	nucleus	67.24	55.44
TraesCSU01G211800.1	Wheat	cytosol	43.28	54.29
Solyc03g120650.2.1	Tomato	cytosol	66.5	54.18
CDY03296	Canola	nucleus	43.77	54.08
GSMUA_Achr3P03410_001	Banana	nucleus	66.75	53.95
Zm00001d053307_P002	Maize	cytosol, plastid	63.57	53.83
KRH39304	Soybean	nucleus	68.22	53.65
TraesCSU01G217800.1	Wheat	cytosol	44.01	52.94
TraesCSU01G211700.1	Wheat	cytosol	44.01	52.94
Bra036671.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	64.55	52.28
AT3G24620.1	Thale cress	nucleus	65.28	51.05
HORVU6Hr1G050860.4	Barley	mitochondrion	62.59	50.89
KRH48369	Soybean	mitochondrion	69.93	50.89
Bra015068.1-P	Field mustard	nucleus	64.55	50.67
CDX77402	Canola	nucleus	64.55	50.67
Solyc12g044270.1.1	Tomato	nucleus	65.04	50.67
CDY46477	Canola	nucleus	64.3	50.48
Bra013249.1-P	Field mustard	nucleus, plastid	63.81	50.39
CDY39783	Canola	mitochondrion	64.55	50.29
TraesCS6D01G183300.1	Wheat	mitochondrion	62.35	50.1
AT4G13240.1	Thale cress	nucleus	63.33	50.1
CDY03297	Canola	mitochondrion	64.06	50.1
Os02t0272300-01	Rice	plasma membrane	61.86	49.32
Zm00001d016001_P002	Maize	mitochondrion	62.35	47.75
CDX93028	Canola	nucleus	43.28	37.34
Solyc01g094610.2.1	Tomato	nucleus	41.08	35.22
Solyc04g082110.2.1	Tomato	nucleus	37.65	34.15
Solyc08g006550.2.1	Tomato	nucleus	43.52	33.58
Solyc01g111930.2.1	Tomato	nucleus	44.74	31.72
Solyc09g011480.2.1	Tomato	nucleus	43.52	30.27
Solyc08g075120.2.1	Tomato	extracellular	39.36	28.6
Solyc10g086660.1.1	Tomato	nucleus	45.97	27.69
Solyc12g096220.1.1	Tomato	nucleus	39.85	22.39

Protein Annotations

EnsemblPlants:Solyc07g032730.2.1	EnsemblPlantsGene:Solyc07g032730.2	Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	GO:GO:0003674	GO:GO:0005085
GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512
InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101	PANTHER:PTHR33101:SF10	PFAM:PF03759	PFscan:PS51334
UniParc:UPI000276B22B	UniProt:K4CDL2	MapMan:27.4.3.1	:	:	:

Description

No Description!

Coordinates

chr7:+:40980247..40982109

Molecular Weight (calculated)

46557.4 Da

IEP (calculated)

5.060

GRAVY (calculated)

-0.503

Length

409 amino acids

Sequence
(BLAST)

001: MLLGEDMSGG GKGVSSALAL SNAITNLAAS IFGEQSKLEP MSQKRKERWR KEIDWLLSVT NYIVEFVPGQ QKSKDGTNME IMITQQRKDL LMNIPALKKL
101: DAMLIDCLDN FKDAKEFWYV SKDADDSEKG VQRSDKWWLP TIKVPPEGLS DESRRWLQYQ KDCVNQVLKA SMAINAQILA EMEVPENYID SLPKNGRSSL
201: GDSIYKNITV EFFDPEQFLS TMDMSSEHKV VNLKDRIEAS IVIWKRKMHQ KDAKSSWVPA VSFEKRELFE ERAETVLLLI KHRFPEIPQS SLEISKIQYN
301: KDVGHSVLES YSRVLESLAY TVTSRIEDVL YADSVAQDPS LAIAKWNRSA NSSPQKRQSV VSTPKEEFER LSCTAETPNS MTLFDFMGWN MEQGDGDVNK
401: TNLEALPQT

Best Arabidopsis Sequence Match ( AT3G24620.1 )
(BLAST)

001: MVAALERGLS ASKSFNFKRM FDSSSTKQQQ SQTIVVENGD SHIVESNTPE SQNSDSFVES PVESSLPMIS PLTRPGKRSE RQQADMEMMK DRFAKLLLGE
101: DMSGGGKGVS SALALSNAIT NLAASIFGEQ TKLQPMPQDR QARWKKEIDW LLSVTDHIVE FVPSQQTSKD GVCTEIMVTR QRGDLLMNIP ALRKLDAMLI
201: DTLDNFRGHN EFWYVSRDSE EGQQARNDRT NDKWWLPPVK VPPGGLSEPS RRMLYFQKDS VTQVQKAAMA INAQVLSEME IPESYIDSLP KNGRASLGDS
301: IYKSITEEWF DPEQFLAMLD MSTEHKVLDL KNRIEASVVI WKRKLHTKDT KSSWGSAVSL EKRELFEERA ETILVLLKQK FPGLPQSSLD ISKIQFNKDV
401: GQAVLESYSR ILESLAYTVM SRIEDVLYTD TLALKQTLLA EETSDGGRTT ETDSESAGSS NSGEEAEKHD PHSKTLLDFM GWNDNSSKGG DKPTKSPNLT
501: PKKLSYLEKL ENLNGFRSPK DRH

Arabidopsis Description

ROPGEF8Rho guanine nucleotide exchange factor 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV40]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.