Factsheet for Solyc08g006550.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067654	Potato	nucleus	96.6	96.24
GSMUA_Achr9P03750_001	Banana	cytosol	60.57	68.88
VIT_13s0019g02710.t01	Wine grape	nucleus	75.28	66.95
KRH73109	Soybean	nucleus	66.79	63.55
KRG97804	Soybean	nucleus	69.25	61.89
KRH31060	Soybean	nucleus	69.06	61.2
KRH15022	Soybean	nucleus	63.96	60.43
EES03886	Sorghum	cytosol	59.81	58.17
TraesCS3B01G396500.1	Wheat	cytosol	58.68	57.7
TraesCS3D01G357800.1	Wheat	cytosol	58.49	57.62
TraesCS3A01G364400.1	Wheat	nucleus	58.68	57.49
Os01t0849100-01	Rice	cytosol	59.06	57.33
Bra009152.1-P	Field mustard	cytosol, plastid	63.58	56.64
Zm00001d042861_P001	Maize	cytosol	59.06	54.62
AT5G05940.1	Thale cress	cytosol	62.64	54.34
TraesCS1D01G280000.1	Wheat	cytosol	56.79	53.85
Os05t0454200-01	Rice	nucleus	57.55	53.7
CDX70109	Canola	cytosol	63.96	53.55
Solyc09g011480.2.1	Tomato	nucleus	59.06	53.23
TraesCS1B01G289900.1	Wheat	cytosol	56.79	53.18
CDX98888	Canola	cytosol	63.96	53.13
HORVU1Hr1G072910.3	Barley	cytosol	56.42	53.01
EES18335	Sorghum	cytosol	57.92	52.39
Zm00001d010062_P001	Maize	peroxisome	56.98	52.34
CDY41197	Canola	cytosol, plastid	53.77	51.44
CDY40246	Canola	cytosol, plastid	53.58	50.99
AT3G55660.1	Thale cress	cytosol, plastid	55.09	50.43
TraesCS1A01G280900.2	Wheat	cytosol	55.85	50.25
Bra007183.1-P	Field mustard	cytosol, plastid	53.58	49.74
Solyc01g094610.2.1	Tomato	nucleus	44.34	49.27
Solyc10g086660.1.1	Tomato	nucleus	61.89	48.31
HORVU3Hr1G085680.2	Barley	plastid	59.06	47.93
Solyc04g082110.2.1	Tomato	nucleus	38.11	44.79
Solyc01g111930.2.1	Tomato	nucleus	48.68	44.71
Solyc07g032730.2.1	Tomato	nucleus	33.58	43.52
Solyc06g066650.2.1	Tomato	nucleus	36.04	40.72
Solyc12g044270.1.1	Tomato	nucleus	38.3	38.67
Solyc03g120650.2.1	Tomato	cytosol	36.42	38.45
Zm00001d047899_P001	Maize	cytosol	20.0	38.13
Solyc12g007150.1.1	Tomato	nucleus	37.36	35.68
Solyc08g075120.2.1	Tomato	extracellular	36.23	34.1
Zm00001d023356_P001	Maize	cytosol	22.64	33.8
Zm00001d037119_P001	Maize	plastid	26.79	32.95
Zm00001d049679_P001	Maize	plastid	26.23	31.45
Solyc12g096220.1.1	Tomato	nucleus	35.28	25.69
GSMUA_Achr6P14950_001	Banana	mitochondrion	57.36	22.89

Protein Annotations

EnsemblPlants:Solyc08g006550.2.1	EnsemblPlantsGene:Solyc08g006550.2	Gene3D:1.20.58.2010	GO:GO:0003674	GO:GO:0005085	GO:GO:0005089
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512	InterPro:PRONE_dom
InterPro:RopGEF	PANTHER:PTHR33101	PANTHER:PTHR33101:SF1	PFAM:PF03759	PFscan:PS51334	SEG:seg
UniParc:UPI000276C048	UniProt:K4CIE3	MapMan:27.4.3.1	:	:	:

Description

Rop guanine nucleotide exchange factor 6 [Source:Projected from Arabidopsis thaliana (AT3G55660) UniProtKB/Swiss-Prot;Acc:Q9M056]

Coordinates

chr8:+:1163040..1165586

Molecular Weight (calculated)

59499.9 Da

IEP (calculated)

8.204

GRAVY (calculated)

-0.470

Length

530 amino acids

Sequence
(BLAST)

001: MENKAENENG PSSESSIWSR SSSDESKEKD SSTSSPSSPL GWPIRRAEKD DVNSKELEMM KERFSKLLLG EDMSGSGKGV CTSLAISNAI TNLCATIFGQ
101: LWRLEPLPLE KKSMWRREME WLVAVSDHIV ELKPSWQTFH DGSKLEVMTS RPRADLFINL PALRKLDNML IEILDSFTNT EFWYVDQGII AAEDDGSASF
201: RKAIQRQKDK WWLPVPRVPH GGLLEDTRKQ LNHKRECASQ ILKAAMSINS ITLAEMEVPE SYLDALPKNG RACLGDVIYR YITSEHFSSE CLLDCLDLST
301: ECVALEIANR VEASIYVWRR KHHPRPPTNP NRSTAKSSWE MVKDLVVDGD KRESLAERAE NLLLCLKQRF PGLTQTTLDT SKIQYNKDVG KCILESYSRV
401: LESLAFNIVA RIDDLLHVDA LTRNSSVPIG NVINHKKVSI PYSGTPYRTP NFSPVPLISP VRGDRTPFLN ANSNKLTGRG FGVKRVLSNY LGCEAKTKNS
501: GNAISNKSSD HIIRSPELCQ AGKGLRSIDR

Best Arabidopsis Sequence Match ( AT5G05940.1 )
(BLAST)

001: MENLVKSCAG IEKKRSNLTP SMEDILTESK ERSSTSGASY ESSSTTTVAS SSPPPPPSQI LGWPIRKASF RKNSKESVNF DHKKLTLHDD SGFKAKEMNS
101: ADVEMMKERF AKLLLGEDMS GSGKGVCTAL AISNAITNLC ATIFGQLWRL EPLSSEKKEM WRREMEWILS VSDHIVELTP STQTYPDGNK FEVMTCRPRF
201: DLFINLPALR KLDNMLLDIL ASFKKTEFWY VDQGIVASEN DGSASFRRKI QRQEEKWWLP VPRLAPNGLT EEARTELNHK RECATQILKA AMAINSLALT
301: EMDVPKSYLE TLPKNGRSCL GDVIYRYVTS DKFSAESLLD CLDLSSEHIA LDIANRVEAS IYVWRRRVQT KLGVNNNTSS TTPKLTWEMV KELMAAGDKR
401: GLLVERSETL LRCLKQRFPS LTQTSLDISK IQWNKDIGKS ILESYSRALE SLASNIIARI DDLLYVDDLT KQSDDNNLLS SPAVSSIIAH KKVVPLPYLI
501: SASGTPYRTS FSTTPGFSPS MISPKKGERR TPYSSKDTNK IIEKGLPSRG YGVRRVLNNY LGMESKLKIC VNPSDNADTA VINQISKDVE EEKKRNSTSV
601: HQKGPPKYTV S

Arabidopsis Description

ROPGEF5Rop guanine nucleotide exchange factor 5 [Source:UniProtKB/Swiss-Prot;Acc:F4K295]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.