Factsheet for GSMUA_Achr6P14950_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 2
golgi 2
plasma membrane 3
endoplasmic reticulum 3
vacuole 2
mitochondrion 3
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P03750_001	Banana	cytosol	26.73	76.18
Solyc08g006550.2.1	Tomato	nucleus	22.89	57.36
PGSC0003DMT400067654	Potato	nucleus	22.89	57.14
Os01t0849100-01	Rice	cytosol	22.97	55.86
EES03886	Sorghum	cytosol	22.74	55.41
AT5G02010.1	Thale cress	nucleus	22.67	55.13
KRH73109	Soybean	nucleus	22.74	54.22
VIT_08s0007g01380.t01	Wine grape	nucleus	24.85	54.19
VIT_13s0019g02710.t01	Wine grape	nucleus	24.25	54.03
CDY10476	Canola	nucleus	22.74	53.93
TraesCS1D01G280000.1	Wheat	cytosol	22.67	53.85
Bra009621.1-P	Field mustard	nucleus	22.67	53.75
CDY40325	Canola	nucleus	22.67	53.75
TraesCS3D01G357800.1	Wheat	cytosol	21.76	53.72
TraesCS3B01G396500.1	Wheat	cytosol	21.69	53.43
TraesCS1B01G289900.1	Wheat	cytosol	22.74	53.36
Os05t0454200-01	Rice	nucleus	22.82	53.35
TraesCS3A01G364400.1	Wheat	nucleus	21.54	52.87
HORVU1Hr1G072910.3	Barley	cytosol	22.44	52.84
Zm00001d042861_P001	Maize	cytosol	22.67	52.53
KRG97804	Soybean	nucleus	23.19	51.94
KRH31060	Soybean	nucleus	23.27	51.67
EES18335	Sorghum	cytosol	22.74	51.54
Solyc09g011480.2.1	Tomato	nucleus	22.74	51.36
Zm00001d010062_P001	Maize	peroxisome	22.29	51.3
KRH15022	Soybean	nucleus	21.61	51.16
Solyc10g086660.1.1	Tomato	nucleus	25.9	50.66
TraesCS1A01G280900.2	Wheat	cytosol	22.36	50.42
PGSC0003DMT400049230	Potato	nucleus	26.2	50.29
KRH00070	Soybean	nucleus	23.19	50.24
GSMUA_Achr2P09130_001	Banana	cytosol	14.38	48.85
Bra009152.1-P	Field mustard	cytosol, plastid	21.69	48.4
KRH65969	Soybean	nucleus	21.84	48.01
KRH75747	Soybean	nucleus	21.01	47.69
GSMUA_Achr5P06900_001	Banana	cytosol	14.98	47.27
PGSC0003DMT400005554	Potato	cytosol, plastid	23.42	47.19
GSMUA_Achr6P14020_001	Banana	cytosol	15.29	47.1
GSMUA_Achr5P20570_001	Banana	nucleus	16.94	46.68
AT5G05940.1	Thale cress	cytosol	21.39	46.48
CDX70109	Canola	cytosol	21.99	46.13
CDX98888	Canola	cytosol	22.14	46.08
GSMUA_Achr10P...	Banana	cytosol	17.92	45.95
CDY41197	Canola	cytosol, plastid	19.13	45.85
CDY40246	Canola	cytosol, plastid	19.2	45.78
HORVU3Hr1G085680.2	Barley	plastid	21.99	44.72
Bra007183.1-P	Field mustard	cytosol, plastid	19.2	44.66
AT3G55660.1	Thale cress	cytosol, plastid	19.35	44.39
GSMUA_Achr2P03580_001	Banana	nucleus	16.94	44.38
GSMUA_Achr4P10530_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	14.31	44.08
KRH49210	Soybean	nucleus, plastid	23.49	43.64
VIT_08s0007g01390.t01	Wine grape	nucleus	19.35	43.19
GSMUA_Achr3P14650_001	Banana	nucleus	18.22	42.61
GSMUA_Achr1P18140_001	Banana	nucleus	17.47	41.95
GSMUA_Achr3P15410_001	Banana	nucleus	15.06	40.32
GSMUA_Achr3P03410_001	Banana	nucleus	15.21	39.92
Zm00001d047899_P001	Maize	cytosol	7.76	37.05
GSMUA_Achr8P14480_001	Banana	nucleus	6.85	35.14
Zm00001d037119_P001	Maize	plastid	10.32	31.79
GSMUA_Achr8P14490_001	Banana	cytosol	4.59	31.77
Zm00001d023356_P001	Maize	cytosol	8.43	31.55
GSMUA_Achr11P...	Banana	cytosol	7.83	31.14
Zm00001d049679_P001	Maize	plastid	10.32	31.0
GSMUA_Achr11P...	Banana	cytosol	3.31	24.18

Protein Annotations

Gene3D:1.20.58.2010	MapMan:27.4.3.1	InterPro:DUF3527	GO:GO:0003674	GO:GO:0005085	GO:GO:0005089
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	EnsemblPlantsGene:GSMUA_Achr6G14950_001	EnsemblPlants:GSMUA_Achr6P14950_001
EnsemblPlants:GSMUA_Achr6T14950_001	InterPro:IPR005512	UniProt:M0T743	PFAM:PF03759	PFAM:PF12043	InterPro:PRONE_dom
PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF1	InterPro:RopGEF	UniParc:UPI0002954612	SEG:seg

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G14950_001]

Coordinates

chr6:+:9929518..9937227

Molecular Weight (calculated)

147051.0 Da

IEP (calculated)

7.436

GRAVY (calculated)

-0.423

Length

1328 amino acids

Sequence
(BLAST)

0001: MLLFYLLSRA HSDPLTALYL VYPILLIIRS VIVSDFCGVV FGIRLDIELM KERFSKLLLG EDMSGCGKGV CTALAISNAI TNLCATVFGQ LWRLEPLPPE
0101: KKSMWRREME WLLCVSDHIV DLMPSWQTFP DGSKLEVMTC RPRSDLYINL PALRKLDNML LEILDSFNDP EFWYVDQGIV APDSDGSASF RRTLFRQEEK
0201: WWLPVPHVPL DGLHENTRKQ LQHKRECANQ ILKASIAINT DTLAEMEVPE TYLSSLPKNA RASLGDLMHR YVTSDQFSPD CLLDCLDLSS EHQALEIANR
0301: VEASTYIWRR RRVARPVSNR NGIATTKSSW RTAVKDMVVD AAGKRELFAD RAETILLCLK QRFPGLTQTA LDVCKIQFNK DLGKSILESY SRVLESLAFN
0401: IVARIDELLY VDDFSKNSDH LLDSRTGVIA HQKASFPCSA PTSDTAFASA HSAPGFSPAP LISSTREESP VFVDAVEAED ERTPEILFNK HERKSSLQLH
0501: RSRSYKENRS FPSKIKNVDL VEKFVALNSE KLPRTVAKDR HKMKKNSVAS PLRTSQKPWP GRTVTGIDEP VMNMSNVPFY LQRIEKGDDI HGKALNFGVL
0601: DWGRLERWTY HQKCVTDVGG GDSTSSSTES SSFSTFGFSN QSCITISSPL PRGKKSPVAS EREDSGHIEG SPGSRISCTK FPGGSDKDHD GDFCVDVLSH
0701: KHVACNSKDS ALEAMSCEEV LRVPRSTTAP SSYKIDDATA TGMAEDPNGS LMKAEECQSK ANHMPQLSQD LKGRWDHLPE SIDSGWLSSD SPPPLTTDDW
0801: LAEGSGCSHS GTLADDVEII HRYPQVPHSC PLPLAVPEDE HDMCCTLPSE IAVPTDKSIC RNGDTELFSR GLCKHHPGAN TAQESRMSEA KVTAVAGKKS
0901: SDHSSTVLKR MSRSSSSKEA SCREQFDPVS CPYNSLGDQA TFKNKHRQSP LRRMLDPILK PKNNAHSTGA SAASWNGRHS WRSMITSSQL PDERHAASMK
1001: QALLQVAWKN GLPLFMLSSC DSEVLAAAIT MRSLDGSDDL ECIYRIFSVN SAKKKSMFWS NYGNKDKRHQ LISHVVAQLK VSLCKTRSYD NGRCRVAREF
1101: VLLGAHPSPT CDKSVDSSAM SELAAIVVRV VPPYMCKSDS STESTNPAGN TSASSDEKCL QTDRLRVILP SGVHGSSTDG EPSPLIERWR SGGACDCGGW
1201: DEGCMLTILS DKFQEQHNNT SCSFQARQTA DGTQRLELSI QGGSKERRHA AFSIVAFKQG LYTVESRSSI SLLQALAICI AALHGRKPCN HPAEPKNLQK
1301: QTVNDQLGRS AAKAYVPNHP PLSPVWRA

Best Arabidopsis Sequence Match ( AT5G02010.1 )
(BLAST)

001: MDGSSENLPE VEEKGRESSC CSSETTRQEE EEQSPSCTED FTASPVSSRW SVKNIDGEKK KIRSDSRVSE VEMMKERFSK LLLGEDMSGS GNGVCTALAI
101: SNAITNLCAT LFGQLWRLEP LPTEKKEMWR REMEWLLCVS DHIVEMTPTW QTFPDGTKLE IMTCRPRSDL YVNLPALRKL DNMLLEILDS FEETEFWYVD
201: QGIMAHESAA DGSSSFRKSF QRQEDKWWLP VPRVSPGGLQ ENSRKQLQHK RDCTNQILKA AMAINSITLA DMEIPESYLE SLPRKGRSCL GDLIYRYISS
301: DQFSPECLLD CLDLSSEHQA IEIANRVESS IYLWHKRTNS KPATNTKTSW EMVKELMVDA DKLELMADRA ESLLLSLKQR FPGLPQTALD MSKIQYNKDI
401: GKSILESYSR VLESLAFNIV ARIDDLLFVD DLTRHSSDQI PTTLGNNGND APKSIAVPVS NYTTPSYSPS KQELRSSITV PPSPSRFKIP HSSSVKRVLT
501: AYVTKNEPRL KNLPLERSSR SSSSERLSLE KCMKESLNVS NLDPGI

Arabidopsis Description

ROPGEF7Rop guanine nucleotide exchange factor 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZN0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.