Factsheet for TraesCS1A01G280900.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G289900.1	Wheat	cytosol	90.49	94.17
TraesCS1D01G280000.1	Wheat	cytosol	88.45	93.2
HORVU1Hr1G072910.3	Barley	cytosol	87.1	90.96
EES18335	Sorghum	cytosol	73.17	73.55
Os05t0454200-01	Rice	nucleus	70.12	72.71
Zm00001d010062_P001	Maize	peroxisome	69.61	71.06
TraesCS3A01G364400.1	Wheat	nucleus	62.82	68.39
GSMUA_Achr9P03750_001	Banana	cytosol	50.42	63.73
PGSC0003DMT400067654	Potato	nucleus	50.59	56.02
Solyc08g006550.2.1	Tomato	nucleus	50.25	55.85
AT5G02010.1	Thale cress	nucleus	50.08	54.03
VIT_13s0019g02710.t01	Wine grape	nucleus	54.5	53.86
CDY10476	Canola	nucleus	50.59	53.21
Bra009621.1-P	Field mustard	nucleus	50.59	53.21
CDY40325	Canola	nucleus	50.42	53.04
TraesCS5A01G340900.1	Wheat	cytosol	42.44	52.3
VIT_08s0007g01380.t01	Wine grape	nucleus	53.99	52.22
KRH73109	Soybean	nucleus	49.24	52.06
Solyc09g011480.2.1	Tomato	nucleus	50.76	50.85
KRG97804	Soybean	nucleus	50.76	50.42
KRH31060	Soybean	nucleus	51.1	50.33
Bra009152.1-P	Field mustard	cytosol, plastid	50.08	49.58
KRH15022	Soybean	nucleus	47.03	49.38
KRH00070	Soybean	nucleus	51.27	49.27
KRH65969	Soybean	nucleus	49.58	48.34
KRH75747	Soybean	nucleus	47.88	48.21
AT5G05940.1	Thale cress	cytosol	49.92	48.12
TraesCS2A01G408100.1	Wheat	cytosol	38.2	48.08
TraesCS6A01G405000.1	Wheat	nucleus	36.33	46.83
Solyc10g086660.1.1	Tomato	nucleus	53.82	46.69
CDX70109	Canola	cytosol	50.08	46.6
CDY40246	Canola	cytosol, plastid	43.97	46.5
CDY41197	Canola	cytosol, plastid	43.63	46.39
CDX98888	Canola	cytosol	50.08	46.24
TraesCS1A01G208700.1	Wheat	nucleus	37.35	46.12
PGSC0003DMT400049230	Potato	nucleus	54.16	46.1
PGSC0003DMT400005554	Potato	cytosol, plastid	51.1	45.68
Bra007183.1-P	Field mustard	cytosol, plastid	43.97	45.36
AT3G55660.1	Thale cress	cytosol, plastid	44.14	44.91
VIT_08s0007g01390.t01	Wine grape	nucleus	43.12	42.69
TraesCS6A01G196000.1	Wheat	cytosol	31.58	42.66
KRH49210	Soybean	nucleus, plastid	51.61	42.52
TraesCS3A01G305500.1	Wheat	cytosol, mitochondrion, nucleus, plastid	31.41	39.36
TraesCS1A01G392100.1	Wheat	plastid	33.79	35.47
TraesCS6A01G270900.1	Wheat	cytosol	29.71	32.23
TraesCS3A01G270400.1	Wheat	plastid	32.94	30.84
GSMUA_Achr6P14950_001	Banana	mitochondrion	50.42	22.36

Protein Annotations

EnsemblPlants:TraesCS1A01G280900.2	EnsemblPlantsGene:TraesCS1A01G280900	Gene3D:1.20.58.2010	GO:GO:0003674	GO:GO:0005089	GO:GO:0005488
GO:GO:0005515	InterPro:IPR005512	InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101	PANTHER:PTHR33101:SF27
PFAM:PF03759	PFscan:PS51334	SEG:seg	MapMan:27.4.3.1	:	:

Description

No Description!

Coordinates

chr1A:+:478567086..478570491

Molecular Weight (calculated)

64554.0 Da

IEP (calculated)

6.435

GRAVY (calculated)

-0.275

Length

589 amino acids

Sequence
(BLAST)

001: MAASDTLTAE SEECRRGSSS SASSVAASTD SYCPPDEWQQ AAIKTCVTDD AVAAIAKANP PAPGKEIPPL AERHRAPGAC LLVLLAECYT TDSLLAFVRW
101: SESGRGLADR AAREFWLAAE VELMKERFSK LLLGEDMSGS GKGVCTALAI SNAITNLCAT IFGQLWRLEP LLPEKKAMWR REMDWLLCVS DHIVELVPTW
201: QTFPDGTRLE IMTSRPRSDL YISLPALRKL DHMLLETLES FRDTEFWYLD QGICAPDCDG SASFRRPAHR RDEKWWLPVP RVPPGGLRDA TRRQLEHKRD
301: AANQILKAAM AINSNALAEM DVPDSYHDSL PKNGRATLGD IIYRYITSEQ FSPDCLLDCL DLSSEYQAVE IANRVEAAVY VWRRRGTAAA KSAGTKSSWG
401: MVKDMIMDTE KRGDLLAERA EGLLISLKQR FPGLTQTSLD MSKIQYNKDV GKSILESYSR VMESLASNII ARIDDLLYVD ELSKQADQKL PAGVAEDGKI
501: ACKNKKAAAT APSPAYAVPA SGTTYVTPSF SPAQLSSPSK IGRALLVDRR AHHGRASKRS ALADHGGGPE VKGMLVTSPV FDAPLGTEL

Best Arabidopsis Sequence Match ( AT3G55660.1 )
(BLAST)

001: MEDNSCIGFE GSKRFGETSK RIIGLIDSVT ESTTDSSLSS SSSGVGSSSG RSSVAERSVS SPPTKSQILG WPLGQGSWRK SSGKMKKKTP TKIDDFGFKR
101: VGTETSEIEL LKERMAKLLL GEDMSGSGEG VCPALAISNA ITNLYAAILG QQWRLEPIPS EKKLMWRREI EVLLSVSDHI VELVPSFQNF PNGNKIEVMN
201: CRPRSDLFTC LPALRKLDNM LIEILDSFGE TEFWYVDQGI VAAESARSNS FREDGDKWWL PLPRVPSDGL TEQTRKKLDH TREFTNQILK ACMSINSIAL
301: AEMEVPQSYL EALPKNGRSC LGDFLYRNIT SDNFSADHLL ESIDLSSELA VVEMANRVEA SMYVWRRRAH SRHLISLYRS TSTRWGMIVK EMMMHQTDGD
401: KREIFAERAE SLLIRLKQRF PGLRQTALDT SKIQYNKDVG KSILESYSRV LESLAYSIGV RIEEVLFMDD ISKDDGDGDD DSCSDKLRLL SKEAASGGSG
501: SLREKLSAPS LFSVSFSGTS TPYRTLSFSA STPSYSPMPL ISPINGGRGG ERAPFLSGRN IRERCGFGPK KALANYLRG

Arabidopsis Description

ROPGEF6Rop guanine nucleotide exchange factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M056]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.