Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009152.1-P | Field mustard | cytosol, plastid | 84.45 | 86.72 |
| CDX70109 | Canola | cytosol | 84.45 | 81.52 |
| CDX98888 | Canola | cytosol | 84.45 | 80.88 |
| GSMUA_Achr9P03750_001 | Banana | cytosol | 51.55 | 67.6 |
| PGSC0003DMT400067654 | Potato | nucleus | 54.83 | 62.97 |
| Solyc08g006550.2.1 | Tomato | nucleus | 54.34 | 62.64 |
| VIT_13s0019g02710.t01 | Wine grape | nucleus | 59.25 | 60.74 |
| KRH73109 | Soybean | nucleus | 55.16 | 60.5 |
| KRG97804 | Soybean | nucleus | 56.63 | 58.35 |
| KRH31060 | Soybean | nucleus | 56.14 | 57.36 |
| KRH15022 | Soybean | nucleus | 52.37 | 57.04 |
| EES03886 | Sorghum | cytosol | 48.94 | 54.86 |
| TraesCS3D01G357800.1 | Wheat | cytosol | 48.12 | 54.65 |
| TraesCS3B01G396500.1 | Wheat | cytosol | 48.12 | 54.55 |
| Os01t0849100-01 | Rice | cytosol | 48.61 | 54.4 |
| AT5G02010.1 | Thale cress | nucleus | 48.61 | 54.4 |
| TraesCS3A01G364400.1 | Wheat | nucleus | 48.12 | 54.34 |
| TraesCS1D01G280000.1 | Wheat | cytosol | 48.61 | 53.13 |
| TraesCS1B01G289900.1 | Wheat | cytosol | 48.77 | 52.65 |
| HORVU1Hr1G072910.3 | Barley | cytosol | 48.45 | 52.48 |
| Os05t0454200-01 | Rice | nucleus | 48.45 | 52.11 |
| Zm00001d042861_P001 | Maize | cytosol | 48.12 | 51.31 |
| EES18335 | Sorghum | cytosol | 48.77 | 50.85 |
| AT3G55660.1 | Thale cress | cytosol, plastid | 47.63 | 50.26 |
| TraesCS1A01G280900.2 | Wheat | cytosol | 48.12 | 49.92 |
| Zm00001d010062_P001 | Maize | peroxisome | 46.97 | 49.74 |
| AT4G00460.2 | Thale cress | nucleus | 37.81 | 48.84 |
| AT4G38430.1 | Thale cress | nucleus | 41.9 | 46.72 |
| HORVU3Hr1G085680.2 | Barley | plastid | 48.61 | 45.48 |
| AT2G45890.1 | Thale cress | nucleus, plastid | 34.04 | 44.92 |
| AT1G01700.4 | Thale cress | nucleus | 37.15 | 44.08 |
| AT1G52240.1 | Thale cress | nucleus | 35.02 | 39.41 |
| AT4G13240.1 | Thale cress | nucleus | 32.73 | 38.68 |
| AT3G24620.1 | Thale cress | nucleus | 33.06 | 38.62 |
| AT1G79860.1 | Thale cress | nucleus | 32.41 | 38.45 |
| AT3G16130.1 | Thale cress | nucleus | 33.22 | 37.73 |
| AT5G19560.4 | Thale cress | mitochondrion | 30.61 | 36.52 |
| Zm00001d047899_P001 | Maize | cytosol | 14.57 | 32.01 |
| Zm00001d023356_P001 | Maize | cytosol | 17.84 | 30.7 |
| Zm00001d037119_P001 | Maize | plastid | 20.95 | 29.7 |
| Zm00001d049679_P001 | Maize | plastid | 20.95 | 28.96 |
| AT1G31650.1 | Thale cress | mitochondrion, nucleus | 26.68 | 28.3 |
| GSMUA_Achr6P14950_001 | Banana | mitochondrion | 46.48 | 21.39 |
Protein Annotations
| Gene3D:1.20.58.2010 | MapMan:27.4.3.1 | EntrezGene:830479 | ProteinID:AED90943.1 | ArrayExpress:AT5G05940 | EnsemblPlantsGene:AT5G05940 |
| RefSeq:AT5G05940 | TAIR:AT5G05940 | RefSeq:AT5G05940-TAIR-G | EnsemblPlants:AT5G05940.1 | TAIR:AT5G05940.1 | Symbol:ATROPGEF5 |
| ProteinID:BAB10799.1 | EMBL:BX832060 | UniProt:F4K295 | GO:GO:0003674 | GO:GO:0005085 | GO:GO:0005089 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | GO:GO:0065009 | InterPro:IPR005512 | RefSeq:NP_196213.2 |
| PFAM:PF03759 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020100 |
| PO:PO:0025022 | InterPro:PRONE_dom | PFscan:PS51334 | PANTHER:PTHR33101 | PANTHER:PTHR33101:SF1 | InterPro:RopGEF |
| UniParc:UPI000034F263 | SEG:seg | : | : | : | : |
Description
ROPGEF5Rop guanine nucleotide exchange factor 5 [Source:UniProtKB/Swiss-Prot;Acc:F4K295]
Coordinates
chr5:+:1785845..1788600
Molecular Weight (calculated)
68468.9 Da
IEP (calculated)
9.178
GRAVY (calculated)
-0.471
Length
611 amino acids
Sequence
(BLAST)
(BLAST)
001: MENLVKSCAG IEKKRSNLTP SMEDILTESK ERSSTSGASY ESSSTTTVAS SSPPPPPSQI LGWPIRKASF RKNSKESVNF DHKKLTLHDD SGFKAKEMNS
101: ADVEMMKERF AKLLLGEDMS GSGKGVCTAL AISNAITNLC ATIFGQLWRL EPLSSEKKEM WRREMEWILS VSDHIVELTP STQTYPDGNK FEVMTCRPRF
201: DLFINLPALR KLDNMLLDIL ASFKKTEFWY VDQGIVASEN DGSASFRRKI QRQEEKWWLP VPRLAPNGLT EEARTELNHK RECATQILKA AMAINSLALT
301: EMDVPKSYLE TLPKNGRSCL GDVIYRYVTS DKFSAESLLD CLDLSSEHIA LDIANRVEAS IYVWRRRVQT KLGVNNNTSS TTPKLTWEMV KELMAAGDKR
401: GLLVERSETL LRCLKQRFPS LTQTSLDISK IQWNKDIGKS ILESYSRALE SLASNIIARI DDLLYVDDLT KQSDDNNLLS SPAVSSIIAH KKVVPLPYLI
501: SASGTPYRTS FSTTPGFSPS MISPKKGERR TPYSSKDTNK IIEKGLPSRG YGVRRVLNNY LGMESKLKIC VNPSDNADTA VINQISKDVE EEKKRNSTSV
601: HQKGPPKYTV S
101: ADVEMMKERF AKLLLGEDMS GSGKGVCTAL AISNAITNLC ATIFGQLWRL EPLSSEKKEM WRREMEWILS VSDHIVELTP STQTYPDGNK FEVMTCRPRF
201: DLFINLPALR KLDNMLLDIL ASFKKTEFWY VDQGIVASEN DGSASFRRKI QRQEEKWWLP VPRLAPNGLT EEARTELNHK RECATQILKA AMAINSLALT
301: EMDVPKSYLE TLPKNGRSCL GDVIYRYVTS DKFSAESLLD CLDLSSEHIA LDIANRVEAS IYVWRRRVQT KLGVNNNTSS TTPKLTWEMV KELMAAGDKR
401: GLLVERSETL LRCLKQRFPS LTQTSLDISK IQWNKDIGKS ILESYSRALE SLASNIIARI DDLLYVDDLT KQSDDNNLLS SPAVSSIIAH KKVVPLPYLI
501: SASGTPYRTS FSTTPGFSPS MISPKKGERR TPYSSKDTNK IIEKGLPSRG YGVRRVLNNY LGMESKLKIC VNPSDNADTA VINQISKDVE EEKKRNSTSV
601: HQKGPPKYTV S
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.