Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003536.1-P | Field mustard | nucleus | 85.44 | 85.77 |
| CDX67930 | Canola | nucleus | 79.81 | 84.39 |
| CDX79407 | Canola | cytosol, endoplasmic reticulum, nucleus | 84.85 | 81.38 |
| KRH44350 | Soybean | nucleus | 60.39 | 68.5 |
| KRH09881 | Soybean | cytosol | 67.77 | 65.48 |
| KRH23439 | Soybean | nucleus | 67.18 | 64.79 |
| Solyc06g066650.2.1 | Tomato | nucleus | 58.45 | 64.18 |
| PGSC0003DMT400042632 | Potato | nucleus | 57.67 | 63.46 |
| KRH47282 | Soybean | nucleus | 66.21 | 63.38 |
| AT1G52240.1 | Thale cress | nucleus | 62.52 | 59.3 |
| Solyc03g120650.2.1 | Tomato | cytosol | 57.48 | 58.96 |
| Solyc12g044270.1.1 | Tomato | nucleus | 60.0 | 58.86 |
| PGSC0003DMT400006531 | Potato | cytosol | 57.28 | 58.76 |
| AT3G24620.1 | Thale cress | nucleus | 58.64 | 57.74 |
| PGSC0003DMT400097197 | Potato | nucleus | 60.19 | 55.06 |
| AT4G13240.1 | Thale cress | nucleus | 55.15 | 54.93 |
| AT3G16130.1 | Thale cress | nucleus | 54.17 | 51.86 |
| AT5G19560.4 | Thale cress | mitochondrion | 50.29 | 50.59 |
| AT4G00460.2 | Thale cress | nucleus | 35.73 | 38.9 |
| AT2G45890.1 | Thale cress | nucleus, plastid | 33.98 | 37.8 |
| AT4G38430.1 | Thale cress | nucleus | 37.86 | 35.58 |
| AT5G02010.1 | Thale cress | nucleus | 37.28 | 35.16 |
| AT1G01700.4 | Thale cress | nucleus | 35.15 | 35.15 |
| AT5G05940.1 | Thale cress | cytosol | 38.45 | 32.41 |
| AT3G55660.1 | Thale cress | cytosol, plastid | 35.92 | 31.95 |
| AT1G31650.1 | Thale cress | mitochondrion, nucleus | 33.2 | 29.69 |
Protein Annotations
| Gene3D:1.20.58.1310 | Gene3D:1.20.58.2010 | MapMan:27.4.3.1 | EntrezGene:844325 | UniProt:A0A178WIS4 | ProteinID:AAG52233.1 |
| ProteinID:AEE36314.1 | ArrayExpress:AT1G79860 | EnsemblPlantsGene:AT1G79860 | RefSeq:AT1G79860 | TAIR:AT1G79860 | RefSeq:AT1G79860-TAIR-G |
| EnsemblPlants:AT1G79860.1 | TAIR:AT1G79860.1 | Symbol:ATROPGEF12 | EMBL:BT033042 | ncoils:Coil | GO:GO:0000003 |
| GO:GO:0003674 | GO:GO:0005085 | GO:GO:0005089 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005886 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0009653 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 | GO:GO:0009856 | GO:GO:0009860 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0030154 | GO:GO:0040007 |
| GO:GO:0065009 | GO:GO:0080092 | GO:GO:0090406 | InterPro:IPR005512 | RefSeq:NP_178104.1 | ProteinID:OAP17363.1 |
| PFAM:PF03759 | PO:PO:0000256 | PO:PO:0000262 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001185 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | InterPro:PRONE_dom | PFscan:PS51334 | PANTHER:PTHR33101 |
| PANTHER:PTHR33101:SF10 | UniProt:Q9CA89 | InterPro:RopGEF | UniParc:UPI000009F627 | SEG:seg | : |
Description
ROPGEF12Rop guanine nucleotide exchange factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA89]
Coordinates
chr1:-:30041989..30044297
Molecular Weight (calculated)
58048.6 Da
IEP (calculated)
4.968
GRAVY (calculated)
-0.555
Length
515 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRASEQEQE TYRSRLFNFK WRNNDNNSAT RHNKSLSVET GLDEAATGSH DAEPLTIIHP SQGPPLSRSA ADEAVLAALA ASQARERQLL ADMEQMKERF
101: SKLLLGEDNS GGGKGVSSAL ALSNAITNLA ASVFGEQRRL EPMPAERRAR WRKEIDWLLS VTDYVVEFAP SQQKNKDGTN MEIMTTRQRT DLHMNIPALK
201: KLDAMLIDCL ENFKDQSEFS YISKDSPDLD GKRNDEKWWI PTVKVPPDGL SEASRRFLQY QKDCVNQVLK AAMAINAQVL FEMEIPESYI DSLPKNGRAS
301: LGDQMYKNIT VDFFDPDQFL SSMDMSSEHK IVDLKNRIEA SIIIWKRKMV YKDNKSSAPW ASGVSLEKRE VFEERAETIL LILKQRYPGI SQSSLDISKI
401: QFNEDVGQAV LESYSRILES LAYTVLSRID DVLEADRAGN KRNTPLEAEE ETLVGSMTLS DFMGWDFDQA ANAELESKKD LPDDPLIKEK LSVVTTKKTS
501: YLETLGGVKS PTARH
101: SKLLLGEDNS GGGKGVSSAL ALSNAITNLA ASVFGEQRRL EPMPAERRAR WRKEIDWLLS VTDYVVEFAP SQQKNKDGTN MEIMTTRQRT DLHMNIPALK
201: KLDAMLIDCL ENFKDQSEFS YISKDSPDLD GKRNDEKWWI PTVKVPPDGL SEASRRFLQY QKDCVNQVLK AAMAINAQVL FEMEIPESYI DSLPKNGRAS
301: LGDQMYKNIT VDFFDPDQFL SSMDMSSEHK IVDLKNRIEA SIIIWKRKMV YKDNKSSAPW ASGVSLEKRE VFEERAETIL LILKQRYPGI SQSSLDISKI
401: QFNEDVGQAV LESYSRILES LAYTVLSRID DVLEADRAGN KRNTPLEAEE ETLVGSMTLS DFMGWDFDQA ANAELESKKD LPDDPLIKEK LSVVTTKKTS
501: YLETLGGVKS PTARH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.