CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09881	Soybean	cytosol	96.44	96.62
KRH44350	Soybean	nucleus	65.92	77.53
KRH47282	Soybean	nucleus	74.72	74.16
GSMUA_Achr5P06900_001	Banana	cytosol	55.62	70.55
GSMUA_Achr6P14020_001	Banana	cytosol	55.81	69.14
CDX67930	Canola	nucleus	61.98	67.97
GSMUA_Achr4P10530_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	54.68	67.75
AT1G79860.1	Thale cress	nucleus	64.79	67.18
Solyc06g066650.2.1	Tomato	nucleus	58.43	66.52
GSMUA_Achr2P09130_001	Banana	cytosol	48.13	65.73
Bra003536.1-P	Field mustard	nucleus	62.73	65.3
PGSC0003DMT400042632	Potato	nucleus	57.12	65.17
Solyc12g044270.1.1	Tomato	nucleus	64.04	65.14
Solyc03g120650.2.1	Tomato	cytosol	60.86	64.74
PGSC0003DMT400006531	Potato	cytosol	60.67	64.54
TraesCS6A01G196000.1	Wheat	cytosol	51.87	63.53
OQU84790	Sorghum	cytosol	51.69	62.73
CDX79407	Canola	cytosol, endoplasmic reticulum, nucleus	62.55	62.2
PGSC0003DMT400097197	Potato	nucleus	64.98	61.63
GSMUA_Achr3P03410_001	Banana	nucleus	58.24	61.46
TraesCSU01G211800.1	Wheat	cytosol	37.08	60.74
GSMUA_Achr3P15410_001	Banana	nucleus	55.24	59.48
KRH39304	Soybean	nucleus	57.87	59.42
TraesCSU01G217800.1	Wheat	cytosol	37.64	59.12
TraesCSU01G211700.1	Wheat	cytosol	37.64	59.12
Zm00001d053307_P002	Maize	cytosol, plastid	53.37	59.01
KRH48369	Soybean	mitochondrion	60.11	57.12
TraesCS6D01G183300.1	Wheat	mitochondrion	54.12	56.78
Os02t0272300-01	Rice	plasma membrane	54.31	56.53
HORVU6Hr1G050860.4	Barley	mitochondrion	53.0	56.26
Zm00001d016001_P002	Maize	mitochondrion	54.49	54.49
KRH15734	Soybean	cytosol	20.6	42.31
KRH65102	Soybean	nucleus	35.21	39.09
KRH29101	Soybean	cytosol, plastid	41.01	38.69
KRH24128	Soybean	cytosol	41.01	38.56
KRH73109	Soybean	nucleus	39.89	38.24
KRG94270	Soybean	mitochondrion	7.87	37.84
KRH00737	Soybean	nucleus, plastid	35.96	37.5
KRH48179	Soybean	nucleus	26.03	37.07
KRH40457	Soybean	cytosol	35.21	36.72
KRH00070	Soybean	nucleus	41.76	36.38
KRH15022	Soybean	nucleus	37.64	35.83
KRH31060	Soybean	nucleus	40.07	35.79
KRG97804	Soybean	nucleus	39.7	35.75
KRH76428	Soybean	mitochondrion, nucleus	36.7	34.81
KRH65969	Soybean	nucleus	38.95	34.44
KRH75747	Soybean	nucleus	37.45	34.19
KRH07751	Soybean	cytosol, nucleus, plastid	35.39	34.05
KRH39757	Soybean	mitochondrion, nucleus	35.77	33.93
KRH07240	Soybean	cytosol, nucleus, plastid	35.21	33.81
KRH49210	Soybean	nucleus, plastid	41.57	31.05

Protein Annotations

Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	MapMan:27.4.3.1	EMBL:ACUP02008465	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G357400
GO:GO:0003674	GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150
GO:GO:0065009	UniProt:I1M5J5	InterPro:IPR005512	EnsemblPlants:KRH23439	ProteinID:KRH23439	ProteinID:KRH23439.1
PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF10	InterPro:RopGEF
UniParc:UPI00023CF74C	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:44525836..44528112

Molecular Weight (calculated)

60256.6 Da

IEP (calculated)

5.694

GRAVY (calculated)

-0.607

Length

534 amino acids

Sequence
(BLAST)

001: MVRAGEQEQE GYKAKLFNFR GIFEGTGRLT KSLSVDTATV LEPTEDGAAS SRSQGSKPLN DLDKMIPKAR VISKEEISVK EAKEKLLQDM EQMKERFSKL
101: LLGEDMSGGG KGVSSALALS NAFTNLAASI FGEQKRLEPM PAERKAKWRK EIDWLLSVTD YVVEMVPSQQ KSKDGSNMEI MTTRQRTDLH MNVPALRKLD
201: AMLLECLDNF KDQNEFYYVS KNSDDSDQGS AKTKNDDKWW LPTPKVPAEG LSDMARKFLQ YQKDCVNQVL KAAMAINAQI LTEMEIPESY IDSLPKNGRA
301: SLGDSNYRSI TVEFFDPDQF LSTMDLSSEH KILDLKNRIE ASIVIWKRKM HQKDSKSAWG SAVSLEKREL FEERAETILL LLKHRFPGLP QSALDISKIQ
401: YNRDVGQAVL ESYSRVLESL AFTVLSRIDD VLQADYQIQS QNLSGRRRSS VSRPFREEID KASAEAGSMT LSDFMGWGSD QGEADMKKDP YAISDDLCKD
501: DDDPKQQKLP TIVTNKKVSY LETLGVMRSP TSRH

Best Arabidopsis Sequence Match ( AT1G79860.1 )
(BLAST)

001: MVRASEQEQE TYRSRLFNFK WRNNDNNSAT RHNKSLSVET GLDEAATGSH DAEPLTIIHP SQGPPLSRSA ADEAVLAALA ASQARERQLL ADMEQMKERF
101: SKLLLGEDNS GGGKGVSSAL ALSNAITNLA ASVFGEQRRL EPMPAERRAR WRKEIDWLLS VTDYVVEFAP SQQKNKDGTN MEIMTTRQRT DLHMNIPALK
201: KLDAMLIDCL ENFKDQSEFS YISKDSPDLD GKRNDEKWWI PTVKVPPDGL SEASRRFLQY QKDCVNQVLK AAMAINAQVL FEMEIPESYI DSLPKNGRAS
301: LGDQMYKNIT VDFFDPDQFL SSMDMSSEHK IVDLKNRIEA SIIIWKRKMV YKDNKSSAPW ASGVSLEKRE VFEERAETIL LILKQRYPGI SQSSLDISKI
401: QFNEDVGQAV LESYSRILES LAYTVLSRID DVLEADRAGN KRNTPLEAEE ETLVGSMTLS DFMGWDFDQA ANAELESKKD LPDDPLIKEK LSVVTTKKTS
501: YLETLGGVKS PTARH

Arabidopsis Description

ROPGEF12Rop guanine nucleotide exchange factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA89]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.