CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07240	Soybean	cytosol, nucleus, plastid	93.15	92.99
KRH76428	Soybean	mitochondrion, nucleus	76.4	75.31
KRH39757	Soybean	mitochondrion, nucleus	74.77	73.71
CDY69871	Canola	cytosol	14.05	69.64
Solyc08g075120.2.1	Tomato	extracellular	63.42	62.52
PGSC0003DMT400053650	Potato	cytosol, nucleus, plastid	62.88	61.99
CDX84189	Canola	cytosol	52.79	59.67
AT1G31650.1	Thale cress	mitochondrion, nucleus	60.72	58.51
Bra005323.1-P	Field mustard	nucleus	52.61	58.28
CDY31706	Canola	cytosol	52.79	58.25
CDY62299	Canola	cytosol, nucleus, plastid	58.2	57.68
CDY12303	Canola	nucleus	58.38	57.55
GSMUA_Achr8P14480_001	Banana	nucleus	26.85	57.53
CDY12411	Canola	cytosol	13.33	57.36
GSMUA_Achr11P...	Banana	cytosol	34.23	56.89
Bra005322.1-P	Field mustard	nucleus	38.56	54.59
KXG30927	Sorghum	cytosol	51.89	53.33
Zm00001d017755_P002	Maize	cytosol	51.17	52.5
Os02t0702600-02	Rice	cytosol	51.17	52.3
TraesCS6D01G244200.1	Wheat	cytosol	50.63	51.75
TraesCS6B01G298000.1	Wheat	cytosol	50.63	51.75
TraesCS6A01G270900.1	Wheat	cytosol	50.63	51.75
Zm00001d051553_P004	Maize	cytosol	50.27	51.67
GSMUA_Achr8P14490_001	Banana	cytosol	17.66	51.04
GSMUA_Achr11P...	Banana	cytosol	15.68	47.8
PGSC0003DMT400075550	Potato	extracellular	17.48	47.09
HORVU6Hr1G068660.4	Barley	nucleus	46.31	42.48
VIT_02s0087g00460.t01	Wine grape	mitochondrion, nucleus	69.19	42.11
KRG94270	Soybean	mitochondrion	8.11	40.54
KRH15734	Soybean	cytosol	18.92	40.38
Solyc12g096220.1.1	Tomato	nucleus	52.43	39.97
KRH65102	Soybean	nucleus	32.07	37.01
KRH44350	Soybean	nucleus	30.09	36.78
KRH09881	Soybean	cytosol	34.41	35.83
KRH48179	Soybean	nucleus	23.96	35.47
KRH23439	Soybean	nucleus	34.05	35.39
KRH73109	Soybean	nucleus	34.95	34.83
KRH00737	Soybean	nucleus, plastid	32.07	34.77
KRH40457	Soybean	cytosol	31.89	34.57
KRH29101	Soybean	cytosol, plastid	34.95	34.28
HORVU6Hr1G041610.18	Barley	plastid	46.31	34.27
KRH39304	Soybean	nucleus	31.89	34.04
KRH24128	Soybean	cytosol	34.77	33.98
KRG97804	Soybean	nucleus	34.95	32.72
KRH15022	Soybean	nucleus	32.79	32.44
KRH31060	Soybean	nucleus	34.95	32.44
KRH47282	Soybean	nucleus	31.35	32.34
KRH48369	Soybean	mitochondrion	32.43	32.03
KRH00070	Soybean	nucleus	34.95	31.65
KRH75747	Soybean	nucleus	33.33	31.62
KRH65969	Soybean	nucleus	34.23	31.46
KRH49210	Soybean	nucleus, plastid	35.5	27.55

Protein Annotations

Gene3D:1.20.58.2010	EntrezGene:100779636	MapMan:27.4.3.1	EMBL:ACUP02010087	ncoils:Coil	EnsemblPlantsGene:GLYMA_16G107900
GO:GO:0003674	GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150
GO:GO:0065009	InterPro:IPR005512	UniProt:K7MGA4	ProteinID:KRH07749.1	ProteinID:KRH07750.1	EnsemblPlants:KRH07751
ProteinID:KRH07751	ProteinID:KRH07751.1	PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101
PANTHER:PTHR33101:SF2	InterPro:RopGEF	UniParc:UPI000233B338	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr16:-:21951734..21958329

Molecular Weight (calculated)

61508.3 Da

IEP (calculated)

6.011

GRAVY (calculated)

-0.381

Length

555 amino acids

Sequence
(BLAST)

001: MSLMRKRLAC CTKEAKISID FDEPERIMTY NGLENCIPDN QSYGDESRTS RGDGCITDSF NDDDSSSSSS KDAFGSFSSK CLTMKRDDHG LEEWELTESP
101: QHFYLKDKSA FDVVNCSDVE AMKEKFAKLF LGGDVTGGAK GLNTALALST AITNLAVTVF GELWKLEPLS EERKSKWRRE MGWLLSPTNY MVQLVPAKQN
201: GANGGIFEIM TPKARADIQM NLPALQKLDS MLIEALDSMV QTEFWYAEEG SRSEGRNTSG RHSKRWWLPS PRVPRTGLSD IERKRLLNQG RVVQQIFKAA
301: KAINDNMLLE MPVPTLIKDA LLKSGKASLG EELHKVLIAE SSSREEMLKA LNLNSEHAAL ETINRLEAAT FSWKERIIQE NSGKSPVRTS WSFMKDPMAG
401: IDKMELLLER AETLLNLLKA RYPNLPQTFL DAAKVQYGKD IGHSILEAYS RVLGSLAFSI LSRIADILQE DALSNPNTPI SASCSPGINL SEAWVVGSRI
501: RHSLIDKMNE ADGQYCASSC GSTSDIELSS TQANATSSVP TTPSRGRLWC IGRGL

Best Arabidopsis Sequence Match ( AT1G31650.1 )
(BLAST)

001: MMLMRRRLAC CSREREISID FDEHEQDKMI TYYGLETCII NNQSYEEESG TSRGDGCLTD SLDDDAFSSC SSSKDASSSF SSKWLPMKND EHSCDGLNLS
101: GRSQHFDAKE KKKQGYGSSQ HFDAKEKPGY VYCHLDVEAM KEKFSKLLLG EDVTGGCKGV QVALALSNAV THLATSIFGE LWKLEPLCEE KKQKWRREMD
201: WLLSPTNYMI ELVPSKQNDA NGRSLEIMTP KARADIHMNL PALQKLDSML IETLDSMVNT EFWYSEIGSR AEGKNKSTSE SKRWWLPSPQ VPKPGLSNSG
301: RKKLLDKGKV VYQVFKATKA INENILLEMP VPIVIKEAIP KSGKNSLGDE LYKMLAVESA TVDEIFISLN LGTEHAALET VNKLESAMFA WKERITEQGS
401: NGKSPVRASW SFAKDPLSEI GRNESLLNRA EALRTQIKSK HPNLPHSFLD ATKIQYDKDI GHAVLEAYSR TLANLAFRIL SRMGEILKED SLSNPNSPAP
501: PSCFPSSRDP YRTPERPLLS SRVRHSLTDD MNKADGTETG LDFLFADAKA SNSVNTTPSR SSRLWCLSKV PSDTSP

Arabidopsis Description

ROPGEF14Rop guanine nucleotide exchange factor 14 [Source:UniProtKB/Swiss-Prot;Acc:Q56WM6]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.