CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03338
KRH54429
KRH54430
KRH57035
KRH63489

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24620.1	KRH03338	AT5G62880.1	22500990
AT3G24620.1	KRH54429	AT5G62880.1	22500990
AT3G24620.1	KRH54430	AT5G62880.1	22500990
AT3G24620.1	KRH57035	AT5G62880.1	22500990
AT3G24620.1	KRH63489	AT5G62880.1	22500990
AT4G13240.1	KRH03338	AT5G62880.1	22500990
AT4G13240.1	KRH54429	AT5G62880.1	22500990
AT4G13240.1	KRH54430	AT5G62880.1	22500990
AT4G13240.1	KRH57035	AT5G62880.1	22500990
AT4G13240.1	KRH63489	AT5G62880.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39304	Soybean	nucleus	87.37	94.42
GSMUA_Achr5P06900_001	Banana	cytosol	53.02	70.78
GSMUA_Achr6P14020_001	Banana	cytosol	53.74	70.07
Solyc07g032730.2.1	Tomato	nucleus	50.89	69.93
GSMUA_Achr2P09130_001	Banana	cytosol	47.33	68.03
VIT_09s0002g04310.t01	Wine grape	cytosol	54.8	67.84
GSMUA_Achr4P10530_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	51.6	67.29
KRH44350	Soybean	nucleus	53.2	65.86
CDY03296	Canola	nucleus	37.54	63.75
TraesCS6A01G196000.1	Wheat	cytosol	48.93	63.07
OQU84790	Sorghum	cytosol	48.93	62.5
CDY46477	Canola	nucleus	56.76	61.23
AT4G13240.1	Thale cress	nucleus	56.23	61.12
PGSC0003DMT400040374	Potato	nucleus	51.07	61.06
CDX77402	Canola	nucleus	56.58	61.04
Bra015068.1-P	Field mustard	nucleus	56.58	61.04
Bra036671.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	54.8	60.99
AT3G24620.1	Thale cress	nucleus	56.41	60.61
CDY03297	Canola	mitochondrion	56.23	60.42
GSMUA_Achr3P03410_001	Banana	nucleus	54.27	60.28
Bra013249.1-P	Field mustard	nucleus, plastid	55.52	60.23
KRH23439	Soybean	nucleus	57.12	60.11
CDY39783	Canola	mitochondrion	56.05	60.0
KRH09881	Soybean	cytosol	56.76	59.85
GSMUA_Achr3P15410_001	Banana	nucleus	52.14	59.07
Zm00001d053307_P002	Maize	cytosol, plastid	50.71	59.01
KRH47282	Soybean	nucleus	56.41	58.92
PGSC0003DMT400001020	Potato	nucleus	57.3	58.02
Solyc12g007150.1.1	Tomato	nucleus	56.76	57.48
TraesCSU01G211800.1	Wheat	cytosol	33.27	57.36
TraesCS6D01G183300.1	Wheat	mitochondrion	51.42	56.78
TraesCSU01G217800.1	Wheat	cytosol	33.99	56.18
TraesCSU01G211700.1	Wheat	cytosol	33.99	56.18
Os02t0272300-01	Rice	plasma membrane	51.25	56.14
HORVU6Hr1G050860.4	Barley	mitochondrion	50.0	55.86
Zm00001d016001_P002	Maize	mitochondrion	51.07	53.75
CDX93028	Canola	nucleus	38.61	45.78
KRH15734	Soybean	cytosol	19.39	41.92
KRH73109	Soybean	nucleus	37.9	38.24
KRH24128	Soybean	cytosol	38.43	38.03
KRH29101	Soybean	cytosol, plastid	38.26	37.99
KRH65102	Soybean	nucleus	32.38	37.84
KRH00737	Soybean	nucleus, plastid	33.81	37.11
KRH40457	Soybean	cytosol	33.45	36.72
KRH00070	Soybean	nucleus	40.04	36.7
KRG94270	Soybean	mitochondrion	7.12	36.04
KRG97804	Soybean	nucleus	37.72	35.75
KRH15022	Soybean	nucleus	35.59	35.65
KRH31060	Soybean	nucleus	37.9	35.62
KRH65969	Soybean	nucleus	38.08	35.43
KRH75747	Soybean	nucleus	36.48	35.04
KRH48179	Soybean	nucleus	23.31	34.93
KRH76428	Soybean	mitochondrion, nucleus	32.74	32.68
KRH07751	Soybean	cytosol, nucleus, plastid	32.03	32.43
KRH07240	Soybean	cytosol, nucleus, plastid	31.85	32.19
KRH39757	Soybean	mitochondrion, nucleus	31.85	31.79
KRH49210	Soybean	nucleus, plastid	40.21	31.61

Protein Annotations

Gene3D:1.20.58.2010	EntrezGene:100787455	MapMan:27.4.3.1	EMBL:ACUP02004225	EnsemblPlantsGene:GLYMA_07G085000	GO:GO:0003674
GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009
UniProt:I1KIP8	InterPro:IPR005512	EnsemblPlants:KRH48369	ProteinID:KRH48369	ProteinID:KRH48369.1	PFAM:PF03759
InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF10	InterPro:RopGEF	UniParc:UPI00023384D5

Description

hypothetical protein

Coordinates

chr7:+:7828234..7833116

Molecular Weight (calculated)

63575.8 Da

IEP (calculated)

5.267

GRAVY (calculated)

-0.645

Length

562 amino acids

Sequence
(BLAST)

001: MVRAFHRQIS MQKSKSFHFR KMFEIPGKHI HGLFDKDHDE AGESDSKIYS KSFESRSSLD QQFEIQLNSD HSPAASLGIE APRMPPKPPT EADLMKERFA
101: KLLLGEDMSG AGNGVSSALA LSNAITNLAA SVFGEQSKLE PMSSERKARW RKEIEWLLSV TDYIVEFAPS QQIAKDGTSM EIMTTRQRTD LLMNIPALRK
201: LDAMLIDTLD NFRDQNEFWY VSKNDENSED NTNSQRKSDK WWLPTVKVPP TGMSEPAGKW IQFQKDNVNQ VLKAAMAINA QILSEMEIPE NYIESLPKNG
301: RESLGESVYK SITVEYFDPG QFLSTMDMST EHKVLDLKNR IEASIVIWRR KMTNKDSKSA WSSAVSIEKR ELFEERAETI LLMLKHQFPG LPQSSLDISK
401: IQYNKDVGQA ILESYSRVIE SLAYTVMSRI DDVLYADSVT KNPSLAVSSR RYSLDSSPAA TEQTSPNSED ENSYLQSSET PPSMTLSDFM GWSSTKGGSD
501: IKNTNSTRDI EDTNSTGDIE EYVKEKDEKS ITKSPKLTTP SKSYYLEKLE YLNALKSPIA RH

Best Arabidopsis Sequence Match ( AT3G24620.1 )
(BLAST)

001: MVAALERGLS ASKSFNFKRM FDSSSTKQQQ SQTIVVENGD SHIVESNTPE SQNSDSFVES PVESSLPMIS PLTRPGKRSE RQQADMEMMK DRFAKLLLGE
101: DMSGGGKGVS SALALSNAIT NLAASIFGEQ TKLQPMPQDR QARWKKEIDW LLSVTDHIVE FVPSQQTSKD GVCTEIMVTR QRGDLLMNIP ALRKLDAMLI
201: DTLDNFRGHN EFWYVSRDSE EGQQARNDRT NDKWWLPPVK VPPGGLSEPS RRMLYFQKDS VTQVQKAAMA INAQVLSEME IPESYIDSLP KNGRASLGDS
301: IYKSITEEWF DPEQFLAMLD MSTEHKVLDL KNRIEASVVI WKRKLHTKDT KSSWGSAVSL EKRELFEERA ETILVLLKQK FPGLPQSSLD ISKIQFNKDV
401: GQAVLESYSR ILESLAYTVM SRIEDVLYTD TLALKQTLLA EETSDGGRTT ETDSESAGSS NSGEEAEKHD PHSKTLLDFM GWNDNSSKGG DKPTKSPNLT
501: PKKLSYLEKL ENLNGFRSPK DRH

Arabidopsis Description

ROPGEF8Rho guanine nucleotide exchange factor 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV40]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.