CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48179	Soybean	nucleus	73.6	94.4
KRH15734	Soybean	cytosol	47.4	87.69
KRH00737	Soybean	nucleus, plastid	74.64	70.12
PGSC0003DMT400000136	Potato	nucleus	69.23	69.81
Solyc01g094610.2.1	Tomato	nucleus	68.81	69.39
KRG94270	Soybean	mitochondrion	16.01	69.37
KRH40457	Soybean	cytosol	73.18	68.75
AT4G00460.2	Thale cress	nucleus	65.28	66.38
Bra000971.1-P	Field mustard	nucleus	65.28	65.69
Bra037342.1-P	Field mustard	cytosol	63.83	64.36
VIT_15s0046g02530.t01	Wine grape	plastid	66.32	63.29
AT1G01700.4	Thale cress	nucleus	64.66	60.39
GSMUA_Achr5P20570_001	Banana	nucleus	58.0	57.88
TraesCS1D01G211900.1	Wheat	nucleus	54.89	55.35
TraesCS1B01G222700.1	Wheat	plastid	54.89	55.23
Os10t0550300-00	Rice	plastid	54.89	55.11
TraesCS1A01G208700.1	Wheat	nucleus	54.47	54.93
HORVU1Hr1G053350.4	Barley	nucleus, plastid	54.05	54.39
EER91970	Sorghum	plastid	54.47	53.58
EES11256	Sorghum	nucleus	52.39	53.5
Zm00001d002696_P001	Maize	cytosol	51.35	53.46
Zm00001d029850_P001	Maize	nucleus, plastid	53.85	52.97
TraesCS2B01G426300.1	Wheat	cytosol	51.14	52.9
TraesCS2A01G408100.1	Wheat	cytosol	50.94	52.35
TraesCS2D01G405400.1	Wheat	nucleus	50.94	52.13
TraesCS6A01G405000.1	Wheat	nucleus	49.48	52.08
Zm00001d021489_P001	Maize	nucleus, plastid	50.1	51.94
EER99384	Sorghum	nucleus, plastid	49.9	51.84
Os04t0559100-00	Rice	cytosol	19.54	51.65
HORVU6Hr1G092860.2	Barley	nucleus	49.06	51.64
Os07t0481100-01	Rice	cytosol	49.06	51.3
TraesCS6D01G388300.1	Wheat	nucleus	49.69	51.18
TraesCS6B01G449200.1	Wheat	nucleus	49.27	50.32
HORVU2Hr1G096430.13	Barley	mitochondrion	50.52	45.76
KRH31060	Soybean	nucleus	51.35	41.3
KRH73109	Soybean	nucleus	47.82	41.29
KRG97804	Soybean	nucleus	50.73	41.15
KRH29101	Soybean	cytosol, plastid	47.61	40.46
KRH75747	Soybean	nucleus	49.06	40.34
KRH44350	Soybean	nucleus	38.05	40.31
KRH24128	Soybean	cytosol	46.99	39.79
KRH65969	Soybean	nucleus	49.48	39.4
KRH00070	Soybean	nucleus	49.48	38.83
KRH15022	Soybean	nucleus	44.49	38.15
KRH47282	Soybean	nucleus	39.92	35.69
KRH09881	Soybean	cytosol	39.09	35.27
KRH23439	Soybean	nucleus	39.09	35.21
KRH39304	Soybean	nucleus	38.05	35.19
KRH49210	Soybean	nucleus, plastid	49.27	33.15
KRH48369	Soybean	mitochondrion	37.84	32.38
KRH07240	Soybean	cytosol, nucleus, plastid	37.42	32.37
KRH07751	Soybean	cytosol, nucleus, plastid	37.01	32.07
KRH76428	Soybean	mitochondrion, nucleus	37.42	31.97
KRH39757	Soybean	mitochondrion, nucleus	36.59	31.26

Protein Annotations

Gene3D:1.20.58.2010	EntrezGene:100785956	MapMan:27.4.3.1	EMBL:ACUP02001311	ncoils:Coil	EnsemblPlantsGene:GLYMA_03G013500
GO:GO:0003674	GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150
GO:GO:0065009	UniProt:I1JKB4	InterPro:IPR005512	ProteinID:KRH65101.1	EnsemblPlants:KRH65102	ProteinID:KRH65102
ProteinID:KRH65102.1	ProteinID:KRH65103.1	PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101
PANTHER:PTHR33101:SF9	InterPro:RopGEF	UniParc:UPI0002339D5E	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:1370977..1375024

Molecular Weight (calculated)

54337.0 Da

IEP (calculated)

5.172

GRAVY (calculated)

-0.534

Length

481 amino acids

Sequence
(BLAST)

001: MDSSSNFDDN SDVGYQPSPS SVDQNDHSIT ETVGYSPLLS GESFAYCRSN SEVSNFSEPI DDNSFASDQP SPSLWTTMKH GASQASLSRL GMKQHRNSLD
101: EKSDDLDLLE TELDMMRERF AKLLLGEDMS GGGKGVCTAV TVSNSITNLY ATAFGQNLKL EPLKPEKKAM WKREMNCLLS VCDYIVEFAP TAQYLEDGTI
201: VEMMSSRPRS DVYINLPALQ KLDTMLIEIL DSFKDTEFWY AEQGSISGNS TRSRGGSFRR IVQRKDEKWW LPVPCVHPGG LSDKSRKHLN EKRDCANQIH
301: KAAMAINSSV LAEMDIPETY MSNLPKSGRT SLGDTIYRYM YSTDKFSPDH LLDCLKISSE HEALELADKV ESSMFTWRRK ACLSHSKTSW NKVKDLMVDT
401: DRSDKNYILA ERAETLLFCL KQRYPELSQT SLDTCKIQYN RDVGKAILES YSRVLEGLAF NIVAWIEDVL HADKSMRNQN V

Best Arabidopsis Sequence Match ( AT4G00460.2 )
(BLAST)

001: MENLSNPDEN DDHQSPRSID QNDQSAVETP VYSTMSIDSF VYPRTCSETT SGFSDQIDET NSFCSEASPC NWPVLTESKS SKCLSGLEMQ SNECLVVQEI
101: SEPELETMKE RFAKLLLGED MSGSGKGVCT AVTISNAITN LYATVFGQNL RLEPLETEKR ALWKREMNCL LSVCDYIVEF IPRCQNLSNG ATVEVMESRP
201: RADIYINLPA LRKLDSMLME ALDSFQNTEF WYAEEGSLSM KSARSSTGSF RKVIVQRKEE KWWLPVPLVP SEGLSDKARK QLKNKRESTN QIHKAAMAIN
301: SSILSEMEIP DSYMTTLPKC GKSSVGDSIY RYMSGSGRFF PEQLLDCLNI SSEHEAVQLA DRVEASMYTW RRKSCLSNSK NSWNMVKDLM STTERTDKNY
401: VMAERAETLL FCLKQRYPEL SQTSLDICKI QYNKDVGKAV LESYSRVLEG LAFNIVAWID DVLYVDKTMR GSE

Arabidopsis Description

ROPGEF3Rop guanine nucleotide exchange factor 3 [Source:UniProtKB/Swiss-Prot;Acc:A4IJ27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.