CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95629
KRH03338
KRH08028
KRH28825
KRH32110
KRH54429
KRH54430
KRH57035
KRH63489
KRH67309
KRH69754
KRH71326
KRH76629

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38430.1	KRG95629	AT2G30580.1	21798944
AT4G38430.1	KRH32110	AT2G30580.1	21798944
AT4G38430.1	KRH67309	AT2G30580.1	21798944
AT4G38430.1	KRH71326	AT2G30580.1	21798944
AT4G38430.1	KRH03338	AT3G48040.1	21798944
AT4G38430.1	KRH54429	AT3G48040.1	21798944
AT4G38430.1	KRH54430	AT3G48040.1	21798944
AT4G38430.1	KRH57035	AT3G48040.1	21798944
AT4G38430.1	KRH63489	AT3G48040.1	21798944
AT4G38430.1	KRH08028	AT3G51300.1	21798944
AT4G38430.1	KRH28825	AT3G51300.1	21798944
AT4G38430.1	KRH69754	AT3G51300.1	21798944
AT4G38430.1	KRH76629	AT3G51300.1	21798944
AT4G38430.1	KRH03338	AT5G62880.1	22500990
AT4G38430.1	KRH54429	AT5G62880.1	22500990
AT4G38430.1	KRH54430	AT5G62880.1	22500990
AT4G38430.1	KRH57035	AT5G62880.1	22500990
AT4G38430.1	KRH63489	AT5G62880.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29101	Soybean	cytosol, plastid	97.01	97.35
VIT_03s0038g03620.t01	Wine grape	cytosol	78.87	76.32
PGSC0003DMT400047997	Potato	nucleus	75.88	74.7
Solyc01g111930.2.1	Tomato	nucleus	75.7	74.52
AT4G38430.1	Thale cress	nucleus	69.54	72.08
TraesCS5A01G340900.1	Wheat	cytosol	59.68	70.92
TraesCS5B01G339200.1	Wheat	cytosol	60.04	70.6
TraesCS5D01G346100.1	Wheat	cytosol	59.68	70.04
CDX77457	Canola	cytosol	66.37	68.92
Zm00001d006269_P001	Maize	cytosol	46.48	68.75
GSMUA_Achr3P14650_001	Banana	nucleus	68.66	68.66
Bra015010.1-P	Field mustard	cytosol	66.02	68.56
CDX85176	Canola	cytosol	65.85	68.37
Os09t0544800-01	Rice	nucleus	66.02	66.84
GSMUA_Achr10P...	Banana	cytosol	60.74	66.6
GSMUA_Achr1P18140_001	Banana	nucleus	64.79	66.55
EER99291	Sorghum	nucleus, plastid	64.44	65.47
HORVU5Hr1G085510.1	Barley	nucleus, plastid	64.44	64.66
Zm00001d021464_P002	Maize	nucleus, plastid	64.08	63.08
GSMUA_Achr2P03580_001	Banana	nucleus	54.23	60.75
KRH15734	Soybean	cytosol	22.36	48.85
KRH65102	Soybean	nucleus	39.79	46.99
KRH73109	Soybean	nucleus	45.25	46.14
KRG97804	Soybean	nucleus	48.06	46.04
KRH44350	Soybean	nucleus	36.8	46.04
KRH31060	Soybean	nucleus	48.42	45.99
KRG94270	Soybean	mitochondrion	8.98	45.95
KRH00070	Soybean	nucleus	48.94	45.35
KRH75747	Soybean	nucleus	45.42	44.1
KRH48179	Soybean	nucleus	29.05	44.0
KRH65969	Soybean	nucleus	46.65	43.87
KRH15022	Soybean	nucleus	42.96	43.49
KRH00737	Soybean	nucleus, plastid	38.56	42.77
KRH40457	Soybean	cytosol	38.38	42.58
KRH09881	Soybean	cytosol	38.73	41.28
KRH23439	Soybean	nucleus	38.56	41.01
KRH39304	Soybean	nucleus	37.32	40.77
KRH47282	Soybean	nucleus	38.03	40.15
KRH49210	Soybean	nucleus, plastid	49.12	39.02
KRH48369	Soybean	mitochondrion	38.03	38.43
KRH07240	Soybean	cytosol, nucleus, plastid	34.15	34.89
KRH07751	Soybean	cytosol, nucleus, plastid	33.98	34.77
KRH76428	Soybean	mitochondrion, nucleus	32.92	33.21
KRH39757	Soybean	mitochondrion, nucleus	32.57	32.86

Protein Annotations

Gene3D:1.20.58.2010	EntrezGene:100789706	MapMan:27.4.3.1	EMBL:ACUP02007171	EnsemblPlantsGene:GLYMA_12G023400	GO:GO:0003674
GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009
UniProt:I1LPF7	InterPro:IPR005512	EnsemblPlants:KRH24128	ProteinID:KRH24128	ProteinID:KRH24128.1	PFAM:PF03759
InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF6	InterPro:RopGEF	UniParc:UPI000233CA36
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:1719014..1722542

Molecular Weight (calculated)

62775.6 Da

IEP (calculated)

6.778

GRAVY (calculated)

-0.356

Length

568 amino acids

Sequence
(BLAST)

001: MGSVSSEDGS DRCGSYSLSA DVSESESCSS FSARRFDAEG ASSSANLSPR PVAAHFNFPP AQVMLPVIGG KDVVVWDHKR DLDLSEQLHF AEVEMMKERF
101: AKLLLGEDMS GGGKGVCTAL AISNAITNLS ATVFGELWRL EPLAPQKKTM WRREMEWLLC VSDSIVELVP SVQQFPGGGT YEVMATRPRS DLYINLPALK
201: KLDGMLLNML DGFHDTQFWY VDRGIILGDS KDCDAYGRPS VRQEEKWWLP SPKLPPNGLS EESRKRLQQC RDCTNQILKA AVAINTSVLA EMEIPGAYIE
301: SLPKNGKACL GDIIYRYITA DQFSPECLLD CLDLSTEHHT LDIANRIEAA IHVWRLKDHK KHLSSAKSRR SWGGKVKGLV ADGEKNKNNF LAQRAETLLE
401: SLKHRFPGLP QTALDMAKIQ YNKDVGQSIL ESYSRVMESL AFNIMARIDD VLYVDDSIKR CAAADSLSLF SRGGFGGMPI QKRFSPSPFS IQHTPYASPF
501: ATPTFCSSTP VTGSPCSPAR IHDVKRNAPK EGADSKTEKL ATSEFERVWS YAGNLSARRA SGDAPERD

Best Arabidopsis Sequence Match ( AT4G38430.1 )
(BLAST)

001: MGSLSSEEDD EVSSERCGSY SPSADISESE SSSSFSCHRF DGEGASSSIP SSPRVVAGRG FYFPAPVMLP VIGGKDVVWD DKQPDNDLSE IEMMKERFAK
101: LLLGEDMSGG GKGVCTALAI SNAITNLSAT VFGELWRLEP LAPQKKAMWR RELEWLLCVS DSIVELIPSI QQFPGGGTYE IMETRPRSDL YANLPALKKL
201: DAMLIDMLDA FSDTEFWYTD RGIVLGDCDK DSYNSPASVR QEDKWWLPCP KVPPNGLSEE ARKKLQQCRD FANQILKAAL AINSGVLAEM EIPDPYLETL
301: PKSGKECLGE IIYQYLTANK FSPECLLDCL DLSSEHQTLE IANRIEAAVH VWRQKNGRRH KKQAKLKLSS WGGKVKGLVN DNERNDFLVQ RAETLLQSLR
401: IRFPGLPQTT LDMNKIQYNK DVGQSILESY SRVMESMAFN ITARIDDVLY VDDAMRRSIS VTESLSLFSI NGLNPQKAFS VQSSPHGSPF ATPALSVASR
501: SPRRAPPLYS VKRNGTREKG IVGETEKAWS YAGNLSSRRV TGVTPERD

Arabidopsis Description

ROPGEF1Rop guanine nucleotide exchange factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZY2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.