Factsheet for Os09t0544800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0742200-01
Os03t0632800-01
Os03t0741700-00
Os06t0234200-03
Os12t0600200-03

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38430.1	Os03t0632800-01	AT2G30580.1	21798944
AT4G38430.1	Os03t0741700-00	AT2G30580.1	21798944
AT4G38430.1	Os12t0600200-03	AT2G30580.1	21798944
AT4G38430.1	Os02t0742200-01	AT3G48040.1	21798944
AT4G38430.1	Os06t0234200-03	AT3G48040.1	21798944
AT4G38430.1	Os02t0742200-01	AT5G62880.1	22500990
AT4G38430.1	Os06t0234200-03	AT5G62880.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006269_P001	Maize	cytosol	63.1	92.19
TraesCS5A01G340900.1	Wheat	cytosol	77.72	91.21
TraesCS5B01G339200.1	Wheat	cytosol	78.07	90.68
EER99291	Sorghum	nucleus, plastid	90.02	90.34
TraesCS5D01G346100.1	Wheat	cytosol	77.72	90.08
HORVU5Hr1G085510.1	Barley	nucleus, plastid	88.59	87.81
Zm00001d021464_P002	Maize	nucleus, plastid	89.13	86.66
GSMUA_Achr3P14650_001	Banana	nucleus	72.73	71.83
GSMUA_Achr1P18140_001	Banana	nucleus	69.16	70.16
GSMUA_Achr10P...	Banana	cytosol	63.99	69.31
VIT_03s0038g03620.t01	Wine grape	cytosol	70.05	66.95
KRH29101	Soybean	cytosol, plastid	67.02	66.43
KRH24128	Soybean	cytosol	66.84	66.02
PGSC0003DMT400047997	Potato	nucleus	67.56	65.68
Solyc01g111930.2.1	Tomato	nucleus	67.56	65.68
AT4G38430.1	Thale cress	nucleus	62.21	63.69
Bra015010.1-P	Field mustard	cytosol	61.5	63.07
CDX85176	Canola	cytosol	61.5	63.07
CDX77457	Canola	cytosol	61.5	63.07
GSMUA_Achr2P03580_001	Banana	nucleus	56.86	62.92
VIT_18s0001g00550.t01	Wine grape	cytosol	56.86	59.96
Solyc04g082110.2.1	Tomato	nucleus	46.88	58.31
PGSC0003DMT400025800	Potato	nucleus	53.65	54.83
Os01t0849100-01	Rice	cytosol	46.35	47.62
Os10t0550300-00	Rice	plastid	39.57	46.35
Os07t0481100-01	Rice	cytosol	37.43	45.65
Os05t0454200-01	Rice	nucleus	45.28	44.72
Os04t0559100-00	Rice	cytosol	13.9	42.86
Os02t0272300-01	Rice	plasma membrane	36.9	40.35
Os01t0760300-01	Rice	plasma membrane	36.72	39.54
Os01t0675000-01	Rice	mitochondrion	36.19	36.64
Os05t0560100-01	Rice	mitochondrion	36.72	36.2
Os02t0702600-02	Rice	cytosol	32.98	34.07

Protein Annotations

Gene3D:1.20.58.2010	MapMan:27.4.3.1	EntrezGene:4347751	EMBL:AK105420	ProteinID:BAF25746.1	ProteinID:BAT09232.1
ProteinID:EEE62930.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0005085	GO:GO:0005089	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150
GO:GO:0009653	GO:GO:0009856	GO:GO:0009860	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0016049	GO:GO:0016324	GO:GO:0030154	GO:GO:0040007	GO:GO:0080092	GO:GO:2000012
GO:GO:2001108	InterPro:IPR005512	EnsemblPlantsGene:Os09g0544800	EnsemblPlants:Os09t0544800-01	PFAM:PF03759	InterPro:PRONE_dom
PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF6	UniProt:Q0IZW9	InterPro:RopGEF	UniParc:UPI0000DD9855
RefSeq:XP_015651165.1	SEG:seg	:	:	:	:

Description

guanine nucleotide exchange factor for Rop 7, small GTPase Rac/ROP guanine nucleotide exchange factor 2Small GTPase Rac/ROP guanine nucleotide exchange factor, Signal transduction (Os09t0544800-01)

Coordinates

chr9:-:21525976..21529859

Molecular Weight (calculated)

61023.3 Da

IEP (calculated)

5.462

GRAVY (calculated)

-0.332

Length

561 amino acids

Sequence
(BLAST)

001: MASASEDDAG SERCCGSYSP SADVSESETS SDCSAPTTTT TTRRFASSSS RGVASSSSSS LLPTPPPSSA AAFFLSAKPA ADLSEVDMMK ERFAKLLLGE
101: DMSGSGKGVC TALAISNAIT NLSATVFGEL WRLEPMASAR KAMWTREMDW LLSVADSIVE LTPSIQELPD GGGQFEVMVP RPRSDLYMNL PALKKLDAML
201: LAMIDGFKET EFWYVDRGIV VDDSGGPFSS SSSSCGRPSV RQEEKWWLPC PRVPPKGLSE DARRKLQQDR DCANQILKAA MAINSDVLAE MEIPEVYLES
301: LPKSGKSCLG EIIYRYITAE QFSPECLLDC LDLSSEHHTL EVANRIEAAI HVWRLKGQKK STPQAKSKKS WGGKVKGLVG DTEKSHVLSQ RADGLLQSLR
401: LRYPGLPQTS LDMNKIQYNK DVGQSILESY SRVLESLAFN IIARIDDVIY VDDATKKSAA ADSVSIFNRG IGVPVQKRIS PSPFSIQHTP YASPFATPTF
501: CSSTPVTGSP GRVQPPLNKD NLPTKQEVKV EKLFSGDIEK VWTYAGNLSA RKDAGDAPER D

Best Arabidopsis Sequence Match ( AT4G38430.1 )
(BLAST)

001: MGSLSSEEDD EVSSERCGSY SPSADISESE SSSSFSCHRF DGEGASSSIP SSPRVVAGRG FYFPAPVMLP VIGGKDVVWD DKQPDNDLSE IEMMKERFAK
101: LLLGEDMSGG GKGVCTALAI SNAITNLSAT VFGELWRLEP LAPQKKAMWR RELEWLLCVS DSIVELIPSI QQFPGGGTYE IMETRPRSDL YANLPALKKL
201: DAMLIDMLDA FSDTEFWYTD RGIVLGDCDK DSYNSPASVR QEDKWWLPCP KVPPNGLSEE ARKKLQQCRD FANQILKAAL AINSGVLAEM EIPDPYLETL
301: PKSGKECLGE IIYQYLTANK FSPECLLDCL DLSSEHQTLE IANRIEAAVH VWRQKNGRRH KKQAKLKLSS WGGKVKGLVN DNERNDFLVQ RAETLLQSLR
401: IRFPGLPQTT LDMNKIQYNK DVGQSILESY SRVMESMAFN ITARIDDVLY VDDAMRRSIS VTESLSLFSI NGLNPQKAFS VQSSPHGSPF ATPALSVASR
501: SPRRAPPLYS VKRNGTREKG IVGETEKAWS YAGNLSSRRV TGVTPERD

Arabidopsis Description

ROPGEF1Rop guanine nucleotide exchange factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZY2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.