Factsheet for Zm00001d021464_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013303_P001
Zm00001d018004_P002
Zm00001d030985_P001
Zm00001d033322_P001
Zm00001d033967_P001
Zm00001d041405_P001
Zm00001d044802_P001
Zm00001d052273_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38430.1	Zm00001d013303_P001	AT2G30580.1	21798944
AT4G38430.1	Zm00001d030985_P001	AT2G30580.1	21798944
AT4G38430.1	Zm00001d033322_P001	AT2G30580.1	21798944
AT4G38430.1	Zm00001d033967_P001	AT2G30580.1	21798944
AT4G38430.1	Zm00001d041405_P001	AT2G30580.1	21798944
AT4G38430.1	Zm00001d018004_P002	AT3G48040.1	21798944
AT4G38430.1	Zm00001d044802_P001	AT3G48040.1	21798944
AT4G38430.1	Zm00001d052273_P004	AT3G48040.1	21798944
AT4G38430.1	Zm00001d018004_P002	AT5G62880.1	22500990
AT4G38430.1	Zm00001d044802_P001	AT5G62880.1	22500990
AT4G38430.1	Zm00001d052273_P004	AT5G62880.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99291	Sorghum	nucleus, plastid	92.37	95.35
Zm00001d006269_P001	Maize	cytosol	62.56	94.01
Os09t0544800-01	Rice	nucleus	86.66	89.13
TraesCS5A01G340900.1	Wheat	cytosol	72.96	88.08
TraesCS5B01G339200.1	Wheat	cytosol	73.14	87.37
TraesCS5D01G346100.1	Wheat	cytosol	73.14	87.19
HORVU5Hr1G085510.1	Barley	nucleus, plastid	83.54	85.16
GSMUA_Achr3P14650_001	Banana	nucleus	70.36	71.48
GSMUA_Achr1P18140_001	Banana	nucleus	67.07	69.98
GSMUA_Achr10P...	Banana	cytosol	62.39	69.5
VIT_03s0038g03620.t01	Wine grape	cytosol	68.28	67.12
PGSC0003DMT400047997	Potato	nucleus	65.34	65.34
Solyc01g111930.2.1	Tomato	nucleus	65.34	65.34
KRH29101	Soybean	cytosol, plastid	63.26	64.49
KRH24128	Soybean	cytosol	63.08	64.08
AT4G38430.1	Thale cress	nucleus	59.62	62.77
Bra015010.1-P	Field mustard	cytosol	59.45	62.71
CDX77457	Canola	cytosol	59.45	62.71
GSMUA_Achr2P03580_001	Banana	nucleus	54.94	62.52
CDX85176	Canola	cytosol	59.27	62.52
VIT_18s0001g00550.t01	Wine grape	cytosol	54.77	59.4
Solyc04g082110.2.1	Tomato	nucleus	44.89	57.43
PGSC0003DMT400025800	Potato	nucleus	51.82	54.46
Zm00001d002696_P001	Maize	cytosol	38.65	48.27
Zm00001d021489_P001	Maize	nucleus, plastid	36.57	45.47
Zm00001d029850_P001	Maize	nucleus, plastid	38.13	44.99
Zm00001d042861_P001	Maize	cytosol	44.37	44.68
Zm00001d010062_P001	Maize	peroxisome	44.54	44.54
Zm00001d012691_P001	Maize	cytosol, extracellular, mitochondrion, plastid	20.8	41.81
Zm00001d053307_P002	Maize	cytosol, plastid	34.14	40.79
Zm00001d043383_P001	Maize	nucleus	34.49	38.05
Zm00001d016001_P002	Maize	mitochondrion	34.84	37.64
Zm00001d038989_P002	Maize	nucleus, plastid	32.76	37.06
Zm00001d009549_P002	Maize	mitochondrion	34.14	35.69
Zm00001d047899_P001	Maize	cytosol	16.81	34.89
Zm00001d017755_P002	Maize	cytosol	31.89	34.01
Zm00001d051553_P004	Maize	cytosol	31.72	33.89
Zm00001d043889_P001	Maize	mitochondrion	34.66	33.06
Zm00001d023356_P001	Maize	cytosol	18.2	29.58
Zm00001d037119_P001	Maize	plastid	20.97	28.07
Zm00001d049679_P001	Maize	plastid	20.45	26.7

Protein Annotations

Gene3D:1.20.58.2010	EntrezGene:100194277	MapMan:27.4.3.1	UniProt:A0A1D6IB97	GO:GO:0003674	GO:GO:0005085
GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512
ProteinID:ONM57220.1	ProteinID:ONM57224.1	PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101
PANTHER:PTHR33101:SF6	InterPro:RopGEF	UniParc:UPI0004DEA136	EnsemblPlantsGene:Zm00001d021464	EnsemblPlants:Zm00001d021464_P002	EnsemblPlants:Zm00001d021464_T002
SEG:seg	:	:	:	:	:

Description

Rop guanine nucleotide exchange factor 1

Coordinates

chr7:+:152793032..152797189

Molecular Weight (calculated)

62674.3 Da

IEP (calculated)

6.528

GRAVY (calculated)

-0.332

Length

577 amino acids

Sequence
(BLAST)

001: MATASEDEAA SDRCSGSYSP SADVSESETS SDCSAPTTRR FASSSSASAS ASATVSRRLA SSSSSLPTPA SAAAFYLSKP PSSDLSASSY PCPCASVAPE
101: IDMMKERFAK LLLGEDMSGS GKGVCTALAI SNAITNLSAT VFGELWRLEP LAKARKAMWT REMEWLLSVS DSIVELTPSI QELPEGGGQF EVMVPRPRTD
201: LYMNLPALKK LDAMLLAMID GFKGTEFWYV DRGVMVEDSG GPFPSSSSSS SCGRPSVRQE EKWWLPCPRV PPKGLSEDSR RKLQQSRDCA NQILKAAMAI
301: NSDVLAEMEI PEMYLETLPK SGKSCLGEII YRYITAEQFS PECLLDCLDL SSEHHTLEVA NRIEAAIHVW KLKGQKNSTP QARSKKSWGG KVKGLVGDKE
401: KSHTLSERAN GLLQSLRLRY PGLPQTSLDM NKIQYNKDVG QSILESYSRV LESLAFNIIA RIDDVIYVDD ATKKSAAAES VSIFNRGTGV PIQKRISLSP
501: FSIQNTPYAS PFATPTFCSS TPVTCSPGRV QPPLNKTNLG RPEIKVEKLF SGDLEKVWTY AGNLSARKDA GDAPERD

Best Arabidopsis Sequence Match ( AT4G38430.1 )
(BLAST)

001: MGSLSSEEDD EVSSERCGSY SPSADISESE SSSSFSCHRF DGEGASSSIP SSPRVVAGRG FYFPAPVMLP VIGGKDVVWD DKQPDNDLSE IEMMKERFAK
101: LLLGEDMSGG GKGVCTALAI SNAITNLSAT VFGELWRLEP LAPQKKAMWR RELEWLLCVS DSIVELIPSI QQFPGGGTYE IMETRPRSDL YANLPALKKL
201: DAMLIDMLDA FSDTEFWYTD RGIVLGDCDK DSYNSPASVR QEDKWWLPCP KVPPNGLSEE ARKKLQQCRD FANQILKAAL AINSGVLAEM EIPDPYLETL
301: PKSGKECLGE IIYQYLTANK FSPECLLDCL DLSSEHQTLE IANRIEAAVH VWRQKNGRRH KKQAKLKLSS WGGKVKGLVN DNERNDFLVQ RAETLLQSLR
401: IRFPGLPQTT LDMNKIQYNK DVGQSILESY SRVMESMAFN ITARIDDVLY VDDAMRRSIS VTESLSLFSI NGLNPQKAFS VQSSPHGSPF ATPALSVASR
501: SPRRAPPLYS VKRNGTREKG IVGETEKAWS YAGNLSSRRV TGVTPERD

Arabidopsis Description

ROPGEF1Rop guanine nucleotide exchange factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZY2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.