Factsheet for Zm00001d043889_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000402_P001
Zm00001d002027_P002
Zm00001d002501_P001
Zm00001d003996_P001
Zm00001d008330_P001
Zm00001d011873_P001
Zm00001d012392_P001
Zm00001d016016_P001
Zm00001d016248_P001
Zm00001d018693_P001
Zm00001d023606_P005
Zm00001d025208_P002
Zm00001d036201_P001
Zm00001d040291_P001
Zm00001d041839_P001
Zm00001d042093_P001
Zm00001d043386_P001
Zm00001d045735_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52240.1	Zm00001d002027_P002	AT1G22920.1	21798944
AT1G52240.1	Zm00001d023606_P005	AT1G34430.1	21798944
AT1G52240.1	Zm00001d041839_P001	AT1G34430.1	21798944
AT1G52240.1	Zm00001d011873_P001	AT1G34570.1	21798944
AT1G52240.1	Zm00001d042093_P001	AT1G34570.1	21798944
AT1G52240.1	Zm00001d016248_P001	AT2G42790.1	21798944
AT1G52240.1	Zm00001d018693_P001	AT3G06430.1	21798944
AT1G52240.1	Zm00001d016016_P001	AT3G16120.1	21798944
AT1G52240.1	Zm00001d043386_P001	AT3G16120.1	21798944
AT1G52240.1	Zm00001d002501_P001	AT3G17668.1	21798944
AT1G52240.1	Zm00001d008330_P001	AT4G15930.1	21798944
AT1G52240.1	Zm00001d040291_P001	AT4G15930.1	21798944
AT1G52240.1	Zm00001d036201_P001	AT4G32960.1	21798944
AT1G52240.1	Zm00001d000402_P001	AT5G22310.1	21798944
AT1G52240.1	Zm00001d003996_P001	AT5G22310.1	21798944
AT1G52240.1	Zm00001d025208_P002	AT5G22310.1	21798944
AT1G52240.1	Zm00001d045735_P002	AT5G57660.1	21798944
AT1G52240.1	Zm00001d012392_P001	AT5G64960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG33101	Sorghum	mitochondrion	80.17	86.76
Os01t0675000-01	Rice	mitochondrion	65.95	72.02
TraesCS3B01G304200.1	Wheat	plastid	59.17	69.38
TraesCS3D01G270200.1	Wheat	plastid	59.17	69.11
HORVU3Hr1G062030.1	Barley	nucleus, plastid	61.49	59.9
Zm00001d012691_P001	Maize	cytosol, extracellular, mitochondrion, plastid	27.6	58.19
Zm00001d038989_P002	Maize	nucleus, plastid	48.1	57.06
TraesCS3A01G270400.1	Wheat	plastid	58.51	56.28
Zm00001d053307_P002	Maize	cytosol, plastid	42.81	53.62
Zm00001d009549_P002	Maize	mitochondrion	48.76	53.44
Zm00001d043383_P001	Maize	nucleus	44.3	51.24
Bra021162.1-P	Field mustard	nucleus	35.54	49.54
Zm00001d016001_P002	Maize	mitochondrion	43.47	49.25
CDY45633	Canola	nucleus	42.15	48.76
Bra018956.1-P	Field mustard	nucleus	43.14	48.69
Bra030396.1-P	Field mustard	nucleus	42.48	47.86
AT1G52240.1	Thale cress	nucleus	42.81	47.7
CDX87879	Canola	nucleus	42.31	45.96
Bra027189.1-P	Field mustard	nucleus	39.01	44.53
CDX97723	Canola	nucleus	39.01	44.36
CDY52982	Canola	nucleus	43.31	43.59
CDY67259	Canola	nucleus	43.31	43.59
CDY30136	Canola	nucleus	39.34	43.27
AT3G16130.1	Thale cress	nucleus	37.69	42.38
CDY28381	Canola	nucleus	39.34	39.73
CDY20181	Canola	nucleus	39.01	38.88
Zm00001d002696_P001	Maize	cytosol	29.59	38.74
Zm00001d021489_P001	Maize	nucleus, plastid	28.76	37.5
Zm00001d029850_P001	Maize	nucleus, plastid	29.26	36.2
Zm00001d042861_P001	Maize	cytosol	33.06	34.9
Zm00001d006269_P001	Maize	cytosol	22.15	34.9
Zm00001d021464_P002	Maize	nucleus, plastid	33.06	34.66
Zm00001d010062_P001	Maize	peroxisome	31.41	32.93
Zm00001d051553_P004	Maize	cytosol	26.61	29.81
Zm00001d017755_P002	Maize	cytosol	26.45	29.57
Zm00001d047899_P001	Maize	cytosol	12.07	26.26
Zm00001d023356_P001	Maize	cytosol	14.71	25.07
Zm00001d037119_P001	Maize	plastid	16.36	22.97
Zm00001d049679_P001	Maize	plastid	16.69	22.85
Bra021161.1-P	Field mustard	nucleus	2.48	11.28

Protein Annotations

Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	MapMan:27.4.3.1	UniProt:A0A1D6NFW3	GO:GO:0003674	GO:GO:0005085
GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512
ProteinID:ONM39352.1	PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF10
InterPro:RopGEF	UniParc:UPI0008426365	EnsemblPlantsGene:Zm00001d043889	EnsemblPlants:Zm00001d043889_P001	EnsemblPlants:Zm00001d043889_T001	SEG:seg

Description

Rop guanine nucleotide exchange factor 9

Coordinates

chr3:-:213109041..213112135

Molecular Weight (calculated)

66564.4 Da

IEP (calculated)

6.183

GRAVY (calculated)

-0.432

Length

605 amino acids

Sequence
(BLAST)

001: MVGGFLRRGH SLDRLLSRRR RAVSPSPSFS SSSSTPSSPR GSSVRSGMMA EDDDDAPTTV AAPPLQRRVL SRSHGSRATP GRSQDLPPVP SRTVRDSGPP
101: SDLDLMKDKF AKLLLGEDMS GTGKGVSSAL ALSNAITNLA ASIFGEQRRL EPMSAERRAR WNKEIDWLLS VADHIVEFSP SQQVSEDGTN IEVSIAIATP
201: ISPCALALTC ISSSNQVMGT QQRGDLLVNI PALRKLDAML LVSTTISYLS LQHTQSNIQM QCNGSGRVFL NSSRRFVFFS AAEQEYLDSF GEAQEFWYVA
301: KDADGGEDDD DSTCDKWWIP TVRVPAEGLS DASRKWLQHQ KDLVGQVLKA AMAINADVIA EMEIPEEYIE SLPKNGRSIL GDSMYKIITD DVFDPNELLQ
401: SVDLSTEHKI VDLKDRIEAS VVIWHRKISN KLSWGPAGVS LEKREEFEER AQTALLILKH RFPGIPQSAL DISKIQYNTD VGYAILESYS RTLESLAFAV
501: LSRIEDVLHA DAVACDPKRT KSRRRPSLEC DAAAEAEAEA EAETAHHSGS VHWQDHQDAE DDGGEKHPDG NGRKLKKLHR VATKKFLHTQ KIDGVAGGLK
601: SFAHR

Best Arabidopsis Sequence Match ( AT1G52240.1 )
(BLAST)

001: MVKAMEQEQE TYKSRLFHFK NMNENSASRH VKSWSSDCAM RMDGSDNLDD DDNDMMMFRS QPGKCGSVDR PSLPIGGVTP NRNDKLPRVS SSDSMEALII
101: LQAAMEQMKE KFSKLLLGED MSGGGKGVSS ALALSNAITN LAASAFGEQR RLEPMAVDRK TRWRREIGWL ISVADYIVEF APTQQTNKDG TSMEVMSTRQ
201: RTDLLCNIPA LKKLDAMLLD CLDKFKDQDE FYYVKKDSPD SCETRNDEKW WLPAVKVPPN GLSEISRRFL QSQKECVNQV LKAAMAINAQ VLSEMEIPES
301: YLESLPKNGR ASLGDVIYRM ITVEMFDADQ FLIEMDLSSE HKILDLKNRI EASIVIWKRK MVQKDTKSPW GSTVSIEKRE QFEERAETIL LLLKQGFPGI
401: SQSSLDISKI QFNRDVGLAI LESYSRVLES LAHTVMSRIE DVLYADQLTQ EPTNNAPSKN RYSLKENEKL REERLSFTED MASGTLSDVM QWGNKNNEMK
501: KESFFGDREK PLLSKVTGIM TNNKKSSYLD NLGAMRSPTA RYS

Arabidopsis Description

ROPGEF11ROPGEF11 [Source:UniProtKB/TrEMBL;Acc:A0A178W8V0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.