Factsheet for Bra021162.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20181	Canola	nucleus	99.08	70.84
Bra027189.1-P	Field mustard	nucleus	84.33	69.06
AT3G16130.1	Thale cress	nucleus	81.11	65.43
Bra018956.1-P	Field mustard	nucleus	68.66	55.6
Bra030396.1-P	Field mustard	nucleus	67.97	54.93
Zm00001d012691_P001	Maize	cytosol, extracellular, mitochondrion, plastid	32.95	49.83
Bra003536.1-P	Field mustard	nucleus	57.83	48.93
Bra036671.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	55.76	47.92
Bra013249.1-P	Field mustard	nucleus, plastid	56.68	47.49
Bra015068.1-P	Field mustard	nucleus	55.76	46.45
TraesCS3D01G296400.1	Wheat	cytosol	47.93	45.02
HORVU3Hr1G073200.1	Barley	nucleus	48.85	44.54
TraesCS3B01G331000.1	Wheat	nucleus	47.7	44.52
TraesCS3A01G305500.1	Wheat	cytosol, mitochondrion, nucleus, plastid	47.23	43.62
Bra020048.1-P	Field mustard	nucleus	49.54	43.52
Zm00001d043383_P001	Maize	nucleus	51.15	42.45
TraesCS3B01G304200.1	Wheat	plastid	50.46	42.44
Zm00001d038989_P002	Maize	nucleus, plastid	49.77	42.35
Os01t0760300-01	Rice	plasma membrane	50.69	42.23
OQU87589	Sorghum	nucleus	50.0	41.97
TraesCS3D01G270200.1	Wheat	plastid	50.0	41.89
Bra006510.1-P	Field mustard	cytosol	47.0	41.8
Os01t0675000-01	Rice	mitochondrion	51.38	40.25
Bra002246.1-P	Field mustard	plastid	47.93	40.23
EES19937	Sorghum	mitochondrion	50.92	40.18
Os05t0560100-01	Rice	mitochondrion	51.84	39.54
Zm00001d009549_P002	Maize	mitochondrion	49.77	39.13
TraesCS1A01G392100.1	Wheat	plastid	50.23	38.86
TraesCS1D01G400200.2	Wheat	plastid	50.23	38.58
KXG33101	Sorghum	mitochondrion	49.54	38.46
TraesCS1B01G420200.1	Wheat	nucleus, plastid	49.77	38.23
Zm00001d043889_P001	Maize	mitochondrion	49.54	35.54
TraesCS3A01G270400.1	Wheat	plastid	50.0	34.5
HORVU3Hr1G062030.1	Barley	nucleus, plastid	49.31	34.46
Bra004945.1-P	Field mustard	nucleus, plastid	34.56	32.61
Bra000971.1-P	Field mustard	nucleus	35.71	32.43
Bra037342.1-P	Field mustard	cytosol	35.25	32.08
Bra009621.1-P	Field mustard	nucleus	41.24	31.96
HORVU1Hr1G086590.2	Barley	plastid	48.85	31.45
Bra015010.1-P	Field mustard	cytosol	39.63	31.44
Bra009152.1-P	Field mustard	cytosol, plastid	40.55	29.58
Bra007183.1-P	Field mustard	cytosol, plastid	38.71	29.42
Bra005323.1-P	Field mustard	nucleus	32.72	28.34
Bra005322.1-P	Field mustard	nucleus	22.35	24.74
Bra021161.1-P	Field mustard	nucleus	0.69	2.26

Protein Annotations

EnsemblPlants:Bra021162.1	EnsemblPlants:Bra021162.1-P	EnsemblPlantsGene:Bra021162	Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	GO:GO:0003674
GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009
InterPro:IPR005512	InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101	PANTHER:PTHR33101:SF10	PFAM:PF03759
PFscan:PS51334	UniParc:UPI0002543BD3	UniProt:M4DXB6	MapMan:27.4.3.1	:	:

Description

AT3G16130 (E=5e-195) ATROPGEF13, ROPGEF13 | ROPGEF13; Rho guanyl-nucleotide exchange factor

Coordinates

chrA01:-:23638077..23639663

Molecular Weight (calculated)

49218.8 Da

IEP (calculated)

5.866

GRAVY (calculated)

-0.505

Length

434 amino acids

Sequence
(BLAST)

001: MSGGGEGVSS ALALSNAITN LSASAFGEQR RLEPISEDRK ERWRREIGWL LSVTDHIVEF SPTQQTNKDG SSIEVMTTRQ RGDLVSNIPA LKKLDVMLTD
101: CLHSFKDQDE FYYITTDSPE SLTSNSTRND DKWWLPTVKV PPTGLSETSK TFLLSQKECV SQVLESAMAI NAEVLSQMEI PESYIDSLPK KGRVSLGDTI
201: YRMLTLDMFD AEQFLLEMDL TSEHKILELK NKIEASVVIW KRKIVQKDNK SSSPFSTNLS MEKRQLLEER AATILFLLKQ VFPGISQSTL DISKIQFNKD
301: IGLAILESYS RVLESLAHTV LSRIEDVLEA DQLTQESEVA VCKRDIVKEA ESPKKEEGKD FCLLEERPKK SKSTISLSQV MQWNMEDHEQ PKKEKNETPR
401: KKLLTRVSSM INKKTSSYLE SLGTTKSPKA WRYS

Best Arabidopsis Sequence Match ( AT3G16130.1 )
(BLAST)

001: MVKASEKEHE KYKPKLFDLE NVKKKNSSSR HFKRWNSDSA LRIEDPDIDD GTVFKKTATS SIQPILPVLA MDEQPQPREA TDEESQKDSE LEQMKDKFAK
101: LLLGEDMSGG SKGVSSALAL SNAITNLAAS AFGEIRRLEA ISEDKKERWR REIGWLLSVT DHIVEFSPTH QTNEDGSSME VMTTKQRTDL VSNIPSLKKL
201: DEMLLDCLDK FKDQDEFYYV TPGSPESENS NSTRNDDKWW LPIVKVPPKG LSETLKRFLL SQRECVCQVL NSAMAINSQV LTEMEIPESY IDSLPKKGRA
301: SLGDMIYRMI TLEMFDAEQF LLEMDLSSEH KILDLKNKFE ASVVIWQRKI VQIDNKSSSP WSTNLSMDKR QQLEERAATI LQLIKQEFPG ISQSTLDISK
401: IQFNRDIGLA IVESYSRILE SLAHTVMSRI EDVLEADQLT QNPELAMCKI HIVKETESPE KEEEPNFCLL EDRPKKQKPT ISLSEVMQWN IETNEPRKEK
501: SDKKLLTRVS SMIMSNNKKT TYLESLGTTR SPTAGRYS

Arabidopsis Description

ATROPGEF13RHO guanyl-nucleotide exchange factor 13 [Source:TAIR;Acc:AT3G16130]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.