Factsheet for Bra009152.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

plastid 3
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70109	Canola	cytosol	97.98	92.1
CDX98888	Canola	cytosol	97.48	90.91
AT5G05940.1	Thale cress	cytosol	86.72	84.45
GSMUA_Achr9P03750_001	Banana	cytosol	52.77	67.38
PGSC0003DMT400067654	Potato	nucleus	57.48	64.29
Solyc08g006550.2.1	Tomato	nucleus	56.64	63.58
KRH73109	Soybean	nucleus	57.98	61.94
VIT_13s0019g02710.t01	Wine grape	nucleus	61.18	61.07
KRG97804	Soybean	nucleus	58.99	59.19
KRH15022	Soybean	nucleus	55.29	58.65
KRH31060	Soybean	nucleus	58.49	58.19
EES03886	Sorghum	cytosol	50.76	55.41
Os01t0849100-01	Rice	cytosol	50.59	55.13
TraesCS3D01G357800.1	Wheat	cytosol	49.24	54.46
TraesCS3B01G396500.1	Wheat	cytosol	49.24	54.36
TraesCS3A01G364400.1	Wheat	nucleus	49.41	54.34
TraesCS1D01G280000.1	Wheat	cytosol	50.08	53.31
Bra009621.1-P	Field mustard	nucleus	49.75	52.86
TraesCS1B01G289900.1	Wheat	cytosol	50.25	52.83
HORVU1Hr1G072910.3	Barley	cytosol	49.92	52.66
Zm00001d042861_P001	Maize	cytosol	50.25	52.18
Os05t0454200-01	Rice	nucleus	49.41	51.76
TraesCS1A01G280900.2	Wheat	cytosol	49.58	50.08
EES18335	Sorghum	cytosol	49.24	50.0
Bra007183.1-P	Field mustard	cytosol, plastid	47.56	49.56
Zm00001d010062_P001	Maize	peroxisome	47.9	49.39
Bra000971.1-P	Field mustard	nucleus	38.15	47.49
Bra037342.1-P	Field mustard	cytosol	37.98	47.38
Bra015010.1-P	Field mustard	cytosol	41.85	45.52
HORVU3Hr1G085680.2	Barley	plastid	49.75	45.33
Bra004945.1-P	Field mustard	nucleus, plastid	34.96	45.22
Bra021162.1-P	Field mustard	nucleus	29.58	40.55
Bra036671.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	34.12	40.2
Bra013249.1-P	Field mustard	nucleus, plastid	34.79	39.96
Bra030396.1-P	Field mustard	nucleus	35.63	39.48
Bra003536.1-P	Field mustard	nucleus	33.45	38.79
Bra015068.1-P	Field mustard	nucleus	33.78	38.58
Bra018956.1-P	Field mustard	nucleus	34.62	38.43
Bra006510.1-P	Field mustard	cytosol	30.92	37.7
Bra020048.1-P	Field mustard	nucleus	31.09	37.45
Bra027189.1-P	Field mustard	nucleus	33.11	37.17
Bra002246.1-P	Field mustard	plastid	30.59	35.2
Zm00001d047899_P001	Maize	cytosol	15.63	33.45
Bra005323.1-P	Field mustard	nucleus	27.9	33.13
Zm00001d023356_P001	Maize	cytosol	18.99	31.83
Bra005322.1-P	Field mustard	nucleus	19.66	29.85
Zm00001d037119_P001	Maize	plastid	21.51	29.7
Zm00001d049679_P001	Maize	plastid	21.34	28.73
GSMUA_Achr6P14950_001	Banana	mitochondrion	48.4	21.69
Bra021161.1-P	Field mustard	nucleus	1.51	6.77

Protein Annotations

Gene3D:1.20.58.2010	MapMan:27.4.3.1	EnsemblPlantsGene:Bra009152	EnsemblPlants:Bra009152.1	EnsemblPlants:Bra009152.1-P	GO:GO:0003674
GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009
InterPro:IPR005512	UniProt:M4CY55	PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101
PANTHER:PTHR33101:SF1	InterPro:RopGEF	UniParc:UPI0002544E19	SEG:seg	:	:

Description

AT5G05940 (E=1e-281) ATROPGEF5, ROPGEF5 | ROPGEF5 (ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 5); Rho guanyl-nucleotide exchange factor

Coordinates

chrA10:+:15438568..15440923

Molecular Weight (calculated)

66387.5 Da

IEP (calculated)

9.402

GRAVY (calculated)

-0.444

Length

595 amino acids

Sequence
(BLAST)

001: METLVKSCAG IEKKRSVLTE SKERSGSSYE VSSAAASSSP PPPQSILGWP IRKASFRKSS KENIKFDHNK PALVADSGFK GKEVNIADVD MMKERFAKLL
101: LGEDMSGSGK GVCTALAISN AITNLCATIF GQLWRLEPLP SEKKAMWRRE MEWILSVSDH IVELTPSTQT YPDGKKFEVM TCKPRFDLFI NLPALRKLDN
201: MLLDVLASFK KTEFWYVDQG IVSSENDGSA SFRRKIQRQE EKWWLPVPRL APNGLTEDAR TELNHKRDCA TQILKAAMAI NSVSLTEMDV PESYLETLPK
301: NGRSCLGDVI YRYITSEKFS AECLLDCLDL SSEHIALDIA NRVEASIYVW RRRVQTKLGV NNTSSSTTPK LSWEMVKDLM AAGDKRGLLV ERSETLLRCL
401: KQRFPSLTQT SLDISKIQSN KDIGKSILES YSRALESLAS NIVARIDDLL YVDDLTKQPD DNNVLSSPRV SVIAHKKVVP VPYLLSASGT PYRTSFSTTP
501: GFSPAPRISP RQGERTPSYS SKNTIKVNEK GLPSRGFGVR RVLNNYLGME SKLKVCVDPS ESPETAVRNQ FGKEGEEEKK RDSITSKGPP KYNVS

Best Arabidopsis Sequence Match ( AT5G05940.1 )
(BLAST)

001: MENLVKSCAG IEKKRSNLTP SMEDILTESK ERSSTSGASY ESSSTTTVAS SSPPPPPSQI LGWPIRKASF RKNSKESVNF DHKKLTLHDD SGFKAKEMNS
101: ADVEMMKERF AKLLLGEDMS GSGKGVCTAL AISNAITNLC ATIFGQLWRL EPLSSEKKEM WRREMEWILS VSDHIVELTP STQTYPDGNK FEVMTCRPRF
201: DLFINLPALR KLDNMLLDIL ASFKKTEFWY VDQGIVASEN DGSASFRRKI QRQEEKWWLP VPRLAPNGLT EEARTELNHK RECATQILKA AMAINSLALT
301: EMDVPKSYLE TLPKNGRSCL GDVIYRYVTS DKFSAESLLD CLDLSSEHIA LDIANRVEAS IYVWRRRVQT KLGVNNNTSS TTPKLTWEMV KELMAAGDKR
401: GLLVERSETL LRCLKQRFPS LTQTSLDISK IQWNKDIGKS ILESYSRALE SLASNIIARI DDLLYVDDLT KQSDDNNLLS SPAVSSIIAH KKVVPLPYLI
501: SASGTPYRTS FSTTPGFSPS MISPKKGERR TPYSSKDTNK IIEKGLPSRG YGVRRVLNNY LGMESKLKIC VNPSDNADTA VINQISKDVE EEKKRNSTSV
601: HQKGPPKYTV S

Arabidopsis Description

ROPGEF5Rop guanine nucleotide exchange factor 5 [Source:UniProtKB/Swiss-Prot;Acc:F4K295]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.